Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_025446.1 Length=157308 Score E Sequences producing significant alignments: (Bits) Value seq1 122 9e-23 seq4 109 6e-19 >seq1 Length=970878 Score = 122 bits (134), Expect = 9e-23 Identities = 275/407 (68%), Gaps = 10/407 (2%) Strand=Plus/Minus Query 4039 CTTCCAACACCCATCATGTCCGGCGTTCGTACCCCAACCCGCCAATTCAGTTCTTGTGTT 4098 || || || || |||||||| ||||| || |||||||| || || ||||| || ||||| Sbjct 158673 CTGCCGACGCCAATCATGTCTGGCGTACGCACCCCAACACGTCAGTTCAGCTCCTGTGTG 158614 Query 4099 CTTATCAAAACCGGTGACACTTTGGACTCAATCAATGCTACAGCCAAAAGTATTGTTGAT 4158 || ||| | ||| |||| ||||||| ||||| || || ||| ||||| | Sbjct 158613 CTGATCGAGTGCGGCGACAGCCTGGACTCCATCAACGCCACCTCCAGCGCAATTGTGAAA 158554 Query 4159 TATGTATCCAAACGCGCTGGGATCGGATTTGATGTCGGAGCAATTCGTGGCATCGGTAGC 4218 ||||| || | || || || ||||| | | | ||| || |||| | || ||| Sbjct 158553 TATGTCTCTCAGCGTGCCGGCATCGGTATCAACGCCGGTCGTATCCGTGCGCTGGGCAGC 158494 Query 4219 CCTATCCGAAAAGGTGAAATGGTGCACACAGGTCTGGTTCCTTTCATAAAAT-ATCT--- 4274 || || || |||||| | | || || || ||| ||| | || || || | Sbjct 158493 CCGATTCGCGGCGGTGAAGCGTTCCATACCGG-CTGTATCCCGTTCTACAAGCATTTCCA 158435 Query 4275 GACTGGGGCATTAAAGTCTTGCTCTCAAGGCGGTATTCGTGGCGGATCAGCAACT-TGCT 4333 ||| | || | ||||| || ||||| ||||| |||||||||| |||| || || | Sbjct 158434 GACCGCGG---TGAAGTCCTGTTCTCAGGGCGGCGTTCGTGGCGGCGCAGCCACGCTGTT 158378 Query 4334 ATATCCCTATCTGGCATTATCAATTTGATGATGTTGTGGTCCTGAAGAACAACCGTGGTC 4393 || ||| || |||||| || | || | |||| |||||||||||||||||| Sbjct 158377 CTA-CCCGATGTGGCATCTGGAAATCGAAAGCCTGCTGGTGCTGAAGAACAACCGTGGTG 158319 Query 4394 TTGAAGAGAACCGTGAACGCCGTATCGACTATGGTATTCAGATCAAC 4440 |||||| ||||| | || | || ||||||||| | ||| ||||| Sbjct 158318 TTGAAGGCAACCGCGTGCGTCACATGGACTATGGTGTACAGCTCAAC 158272 Score = 86.0 bits (94), Expect = 6e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 76389 AATTTGGCGACGATGGCAGGACTTGAACCTGCGACATATGGATTAACAGTCCACCGTTCT 76448 |||||||| | || | ||||| ||||| | |||||| ||||||||||||| ||||||| Sbjct 378711 AATTTGGCTCCTCTGACTGGACTCGAACCAGTGACATACGGATTAACAGTCCGCCGTTCT 378770 Query 76449 ACCGACTGAACTACA 76463 ||||||||||||||| Sbjct 378771 ACCGACTGAACTACA 378785 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 76389 AATTTGGCGACGATGGCAGGACTTGAACCTGCGACATATGGATTAACAGTCCACCGTTCT 76448 ||| |||| | || | ||||| ||||| | |||||| ||||||||||||| ||||||| Sbjct 479393 AATCTGGCTCCTCTGACTGGACTCGAACCAGTGACATACGGATTAACAGTCCGCCGTTCT 479452 Query 76449 ACCGACTGAACTACA 76463 ||||||||||||||| Sbjct 479453 ACCGACTGAACTACA 479467 >seq4 Length=447486 Score = 109 bits (120), Expect = 6e-19 Identities = 72/80 (90%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 76785 ATTTGGTGACCCTGGCTGGACTTGAACCAGCGACCAATCGATTATGAGTCGACTGCTCTA 76844 |||||||| ||| ||||| |||||||||||||||| ||||||||||||| |||||||| Sbjct 299304 ATTTGGTGGCCCCTGCTGGGTTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTA 299245 Query 76845 ACCACTGAGCTACGGGGCCA 76864 |||||||||||| ||||||| Sbjct 299244 ACCACTGAGCTAAGGGGCCA 299225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 503217534404320