Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq575 210 3e-48 seq11 107 3e-17 seq344 93.3 6e-13 seq6 93.3 6e-13 seq19 91.5 2e-12 >seq575 Length=9735 Score = 210 bits (232), Expect = 3e-48 Identities = 202/259 (78%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 259923 CGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGG 259982 |||| |||||||| || ||||| ||||| | ||||||| |||||| || || ||| | Sbjct 2274 CGCCGACGCTCTTCAACGCCGGAACGCCTCACCCGCAGCTTTCGTCCTGTTTCCTGGTCA 2333 Query 259983 ACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCT 260042 ||||||| |||||||| || ||||| || |||||||| ||| |||||||||||||| Sbjct 2334 CGATGAAGGATGATTCGATTGAAGGCATTTACGACACGCTTAAGACGTGCGCGCTCATCT 2393 Query 260043 CCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACG 260102 ||||| | |||||||| |||||||| | ||||| | ||||| | ||| ||||| Sbjct 2394 CCAAGACCGCCGGCGGTATCGGTTTGAGCATCCACAACATCCGCGCGACCGGCTCCTACA 2453 Query 260103 TGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACA 260162 | || ||||| |||||| | || |||||| |||| |||||||| || || | ||| ||| Sbjct 2454 TCGCCGGCACAAACGGCTACTCGAACGGCATTGTCCCCATGCTCCGTGTCTACAACAACA 2513 Query 260163 CGGCGCGCTACGTCGACCA 260181 | ||||||||||||||||| Sbjct 2514 CCGCGCGCTACGTCGACCA 2532 Score = 107 bits (118), Expect = 3e-17 Identities = 293/455 (64%), Gaps = 6/455 (1%) Strand=Plus/Plus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 || ||| |||||| || ||||| || |||||| || ||||||||||||||| || Sbjct 2534 GGTGGCAACAAGCGTCCCGGAGCCTTCGCGATCTACCTCGAGCCGTGGCACGCCGACGTC 2593 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 || | | |||||||| |||||||||||||| |||| ||| |||| || Sbjct 2594 TTCGAATTCCTGGACCTTCGCAAGAACCACGGCAA-GGAG-----GAAGTTCGCGCTCGT 2647 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCGC 261967 |||||||| | | || |||| ||| || || ||| || | | | ||| | || Sbjct 2648 GATCTCTTCTTTGCGCTCTGGATTCCCGATCTTTTCATGGAGCGTGTCGAGGCCGCCGGC 2707 Query 261968 GACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCGCGGCC 262027 || ||| | ||||| ||||| |||| || |||||||| |||||| |||||||| || Sbjct 2708 GATTGGCCTCTCTTCTGCCCCGCCGAAGCCCCCGGCCTCCACGAAGTCTATGGCGAGGAG 2767 Query 262028 TTTGACGCCCTCTATGAGNNNNNNNNNNNNNNNNNNNNNNCGCGGACCGTCGTGCCCGCA 262087 || |||| | | ||| | || | ||||| Sbjct 2768 TTCCGCGCCTTGTTCGAGAAATACGAAAAGGAGGGCCGCGCCAAGAAAACGATCCCCGCG 2827 Query 262088 CGACAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTC 262147 | | || | |||| || ||| | | ||||| |||| || |||| || | ||| || Sbjct 2828 CAAAAGCTTTGGTACGCGATTCTTGAAGCCCAGGTCGAAACTGGCAACCCTTTTATGCTC 2887 Query 262148 TACAAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAGGCC 262207 ||||| ||||||| ||| || ||||| |||| || ||||| | | | | Sbjct 2888 TACAAAGACGCCGCGAACAAGAAATCGAACCAAAAGAATCTTGGCACGATCAAGTCGTCG 2947 Query 262208 AACCTGTGCACCGAGATCGTCCAGTTTTCGTCGCC 262242 |||||||||||||||||| || ||| ||| |||| Sbjct 2948 AACCTGTGCACCGAGATCATCGAGTACTCGGCGCC 2982 >seq11 Length=201304 Score = 107 bits (118), Expect = 3e-17 Identities = 170/238 (71%), Gaps = 7/238 (3%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| |||| | |||| || ||||| ||||| || |||||||||||||| ||| | |||| Sbjct 140125 GATCTGGGCACAGTAC-AAGAAGGCTGAGGCATCTTTTTGGACCGCCGAAGAGATGGACC 140067 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTCATCA 1455891 | | |||| | | |||||| ||| | |||||||||| | |||||| Sbjct 140066 TGTCCAAGGACATGCACGACTGGGACAACAAGCTCAAGCCCGACGAGCGCTACTTCATCT 140007 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 |||||||||||||| ||||||||||| ||| |||||||| ||||||| ||| || Sbjct 140006 CGCACGTCCTCGCCT-TTTTCGCCGCCTCCGACGGCATCGTCAACGAGAACTTGGTCGAG 139948 Query 1455952 CGCTT-TATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008 || || | || |||||||| | | ||||| || | || ||||| || || ||| Sbjct 139947 CGATTCTCTG-GTGAGGTCCAGTCAGCCGAGGCTCGATGCTTCTACGGTTTTCAAATC 139891 >seq344 Length=20868 Score = 93.3 bits (102), Expect = 6e-13 Identities = 159/228 (70%), Gaps = 12/228 (5%) Strand=Plus/Minus Query 724916 CAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTC 724975 ||||||| | ||||| || |||||| |||| | ||| || |||||| | ||| Sbjct 20103 CAAGGTGTTGAAGCAAGTCCACCCCGACACCGGT-----ATC-TCGAACAAGGCGATGCT 20050 Query 724976 GATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCT 725035 |||| | |||||||| |||||||| || | || |||||| || ||| || | || Sbjct 20049 GATCCTCAACTCGTTCGTCAACGATATCTTTGAGCGCATCACCATCGAAGCGTGCAAGCT 19990 Query 725036 GGCGCGCTCCAACAAGCGCAACACGA---TCGGCACGCGCGAGATCCAGACCGCCGTGCG 725092 ||| || |||| | ||| ||| || ||||||||||||||||| | || || Sbjct 19989 CGCGACCTACAACCA---CAAGGCGACTATCTCGTCGCGCGAGATCCAGACCTCGGTCCG 19933 Query 725093 CCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||||| | | ||| || ||| ||| ||||||| |||| || ||||| Sbjct 19932 ATTGATCCTCCCCGGAGAGCTGTCCAAGCACGCCATCTCGGAAGGCAC 19885 >seq6 Length=280608 Score = 93.3 bits (102), Expect = 6e-13 Identities = 113/149 (76%), Gaps = 4/149 (3%) Strand=Plus/Plus Query 165765 TGGGGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGCGAGATGGCGTCGGCG 165824 |||||||| | || || ||||||||||| |||||| | |||||||| ||||| ||||| Sbjct 138418 TGGGGCGCGATTGGCGCACGCACCACCGAAAGCCAGATCCACCGCGAAATGGCATCGGCC 138477 Query 165825 CTGCCGCTGCCC-ATTGGCTTCAAAAACAGCACCGACGGCAGCGTGGCGACGGCCCTCGA 165883 || | |||||| | ||||| |||||| ||||||| || | ||| || ||| | || Sbjct 138478 CT-CTCCTGCCCGGTCGGCTTTAAAAACGGCACCGATGGTAACGTACAGATTGCCGTGGA 138536 Query 165884 TGCCGTGCGCACTGC-CGC-CCAGCCACA 165910 ||| | ||| | || ||| ||||||||| Sbjct 138537 TGCGATTCGCGCCGCGCGCGCCAGCCACA 138565 >seq19 Length=154254 Score = 91.5 bits (100), Expect = 2e-12 Identities = 136/189 (72%), Gaps = 8/189 (4%) Strand=Plus/Minus Query 724958 CTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGG 725017 ||| |||||| | ||| ||| | |||||||| ||||||||||| | || |||||| Sbjct 20472 CTCGAACAAGGCGATGCTAATCCTCAACTCGTTCGTCAACGACATCTTTGAGCGCATCAC 20413 Query 725018 CACCGAGGCCGGTCGCCTGGCGCGCTCCA-ACAAGCGCAAC---ACGATCGGCACGCGCG 725073 | |||||| ||| | || ||| | | |||| | ||| |||||| |||||| Sbjct 20412 CCTCGAGGC--GTC--CAAGCTCGCGCAATACAACCACAAGGCGACGATCACGTCGCGCG 20357 Query 725074 AGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCG 725133 |||||||||| | || ||| ||||| | | || ||| || ||| ||||||| |||| | Sbjct 20356 AGATCCAGACTTCGGTTCGCTTGATCCTCCCTGGAGAATTGTCCAAGCACGCCATCTCGG 20297 Query 725134 AGGGCACCA 725142 | ||||||| Sbjct 20296 AAGGCACCA 20288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177196898243778