Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_027331.1 Length=170341 Score E Sequences producing significant alignments: (Bits) Value seq1 134 2e-26 >seq1 Length=970878 Score = 134 bits (148), Expect = 2e-26 Identities = 327/494 (66%), Gaps = 6/494 (1%) Strand=Plus/Plus Query 143073 GGACTGAACAGAGTTATGTATTCATCTTTGCCAAGACGTTCCATCATCAGGTCGTTGATT 143132 || |||||||| || || | ||| |||| || || | |||||| | ||||| Sbjct 158219 GGGCTGAACAGGGTGATATCTTCGCCTTTCAGCAGGCGCTGATACATCAGCTTGTTGAGC 158278 Query 143133 TGAAGACCATAGTCCAGGTGACGAATTCGGTTTTCATCTACGCCTTTGTTGTTCTTAAGT 143192 || | ||||||||||| |||||| | ||||| | || || || ||||||||| || Sbjct 158279 TGTACACCATAGTCCATGTGACGCACGCGGTTGCCTTCAACACCACGGTTGTTCTTCAGC 158338 Query 143193 ACGAGGAGATTCTCGACTTCAAGATGCCAAATTGGATAGTACAATGTTGCGGCACCACCA 143252 || || || | |||| ||| |||||||| || || ||| ||| || || || || ||| Sbjct 158339 ACCAGCAGGCTTTCGATTTCCAGATGCCACATCGGGTAGAACAGCGTGGCTGCGCCGCCA 158398 Query 143253 CGAACTCCGCCTTGGGAACAGGATTTAACTGCAGTTTGGAAGTGTTTCCAGAAAGGAATA 143312 ||||| ||||| || |||||||| || || || || ||||| || || |||| || ||| Sbjct 158399 CGAACGCCGCCCTGAGAACAGGACTTCACCGCGGTCTGGAAATGCTTGTAGAACGGGATA 158458 Query 143313 ACTCCAGTATGCTTGACTTCACCGTTTCCGATTTTTGAACCTTCTGCACGCAACATCCCC 143372 || ||||| |||||||| | || || ||||| | || Sbjct 158459 CAGCCGGTATGGAACGCTTCACCGCCGCGAATCGGGCTGCCCAGCGCACGGATACGACCG 158518 Query 143373 GCGTTAATGCCAATACCTGCACGCTTACTGATATA---CTCAATAATGCTTGCACTGGCT 143429 ||||| || || || || ||||||| | || ||| | |||| ||| | |||| Sbjct 158519 GCGTTGATACCGATGCCGGCACGCTGAGAGACATATTTCACAATTGCGCTGGAGGTGGC- 158577 Query 143430 TTGTTAATTGACTTAAGTGAGTCACCAGCTTCAATAACAACACAAGAGCTAAACTGACGA 143489 ||| || || | || ||| || || || | ||||| ||||| |||||||| Sbjct 158578 --GTTGATGGAGTCCAGGCTGTCGCCGCACTCGATCAGCACACAGGAGCTGAACTGACGT 158635 Query 143490 GTCGGTGTACGAGCCCCGGCCATAATTGGAGTAGGCAAAGAAATTTGACGAGTAGATACG 143549 || || || || | || | ||| ||||| || |||| || |||| | || || | Sbjct 158636 GTTGGGGTGCGTACGCCAGACATGATTGGCGTCGGCAGGGAGATTTTAAACGTCGAGATC 158695 Query 143550 GCGTCATAAAAACG 143563 || ||||| ||||| Sbjct 158696 GCATCATAGAAACG 158709 Score = 118 bits (130), Expect = 1e-21 Identities = 216/307 (70%), Gaps = 22/307 (7%) Strand=Plus/Plus Query 141365 GCAGGATCATTGAACAA-GTTACGCATGATGTGGGTGTAAGAACGAGAGTGAATCGTTTC 141423 || ||||| || ||||| |||||| |||||||||||||||||||| ||||||||||| || Sbjct 156530 GCCGGATCGTT-AACAATGTTACGGATGATGTGGGTGTAAGAACGGGAGTGAATCGTCTC 156588 Query 141424 AGAGAACGTCCAAGTCTGGTTCCAAGTATCCAAAGAAGG-ATCGCTAATCAGAGCAGACA 141482 ||||||| ||| || | |||| || |||| ||| |||| ||| ||| Sbjct 156589 TGAGAACGCCCAGGTTTCAATCCAGGTTTCCAGTTCAGGAATCG------AGATCAG--- 156639 Query 141483 AGACAGCAGC---AGGT----GCT-CGACCTTGAATTGAATCCAATAAGCTCTGATACTT 141534 | ||||||| | || ||| || || ||||| ||||||| | |||||||||| Sbjct 156640 CGGCAGCAGCGCGACGTTCGGGCTGCGGCCCTGAATCGAATCCAGCAGCGTCTGATACTT 156699 Query 141535 CAAGTTGTTGATAAAAATATTTTGCTGATGAACTGGGAGCTTCTCATATTGAGCTCGGTC 141594 || |||| ||||||| |||| || | |||| | || ||| || || | || || Sbjct 156700 CAGGTTGCTGATAAAGATATGTTTTTCATGATCCGGCAGCGCCTGGTAATCGATGCGATC 156759 Query 141595 -AGTCATTAAGTTAACTTCTTCTGGGCGCCAGAAGAAACTCAACTGCTTTTCAATTAGGT 141653 || | | || || ||||| || ||||||||||| | ||||||||| || || | Sbjct 156760 GCGTGA-AACGTCGACCTCTTCCGGACGCCAGAAGAAGGAGAGCTGCTTTTCGATCAGCT 156818 Query 141654 CTTCAAA 141660 |||||| Sbjct 156819 TTTCAAA 156825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544919814117240