Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_027339.1 Length=38389 Score E Sequences producing significant alignments: (Bits) Value seq1 316 5e-82 seq174 132 1e-26 >seq1 Length=970878 Score = 316 bits (350), Expect = 5e-82 Identities = 665/984 (68%), Gaps = 8/984 (1%) Strand=Plus/Plus Query 19768 CAAAATATACTTAGGTCTTGATTTT--GTTTCTAAGTAAATTCTACCTATATATTCACCG 19825 ||||||||| ||| | |||||| ||||| | |||||| | || ||||||||||| Sbjct 786004 CAAAATATAGCGAGGAC--GATTTTTGGTTTCCATGTAAATGCGGCCGATATATTCACCC 786061 Query 19826 AGAACACCAATCCCGATCAGTTGCACTCCACCCAAGAAA-AGTATTGATACAAGCAGGGA 19884 || || |||||||| || || || || ||| |||||||| || | || || || | || Sbjct 786062 AGCACGCCAATCCCAATAAGCTGAACGCCA-CCAAGAAACAGCACGGAAACCAGAATAGA 786120 Query 19885 GGGATACCCGCGTACTGGGTTACCAAAGACAAGGGTGTCTATAATCATCCATGCACCATA 19944 ||| || || | || ||||||||||| | | | || | |||||||| ||||| Sbjct 786121 GGGGTAGCCTGGCACCGGGTTACCAAACAGCAACTTATCCAGGATCATCCAGAGTCCATA 786180 Query 19945 TAAAAATGAAATGCTTGCAACAAACAAGCCTATATAAGTCCATACGCGAAGAGGAAAGGT 20004 || ||| | | || || | || || | ||| | ||| | |||||| |||| || Sbjct 786181 TAGAAAAGCTAGCGAGGCCACCAGAAAACCCAGATATGACCAGATGCGAAGTGGAACCGT 786240 Query 20005 TGAAAAACTTGTGATACCTTCCAGTGCCAGATTCCATAATTTCCAGCCATTAAATTTTGA 20064 || || || | || ||||| || |||||||| | |||||||| ||||| Sbjct 786241 AGAGAATGAGGTCAGTCCCTCCAGCGCAAGATTCCACAGCTTCCAGCCGCCGAATTTACT 786300 Query 20065 GATGCCAGCAACACGCTCTGCGCGTACATATTCAACGACATCCGTCTGACCACCCACCCA 20124 | ||| || | ||||| | || |||||||| |||| ||| |||| || || ||||| Sbjct 786301 GTGGCCCGCGATCCGCTCAGTACGCACATATTCTACGATATCAGTCTTTCCGCCGACCCA 786360 Query 20125 GCTCAGTATGCCTTTCATGAAAAGATTGCGCTCAGGCAACAGTTTAATGTTCTCCACAAC 20184 ||||| || || ||||| || ||||| ||| |||| ||| ||||| ||||| ||||| Sbjct 786361 ACTCAGAATCCCCTTCATAAAGAGATTCTTCTCGGGCAGCAGCTTAATATTCTCGACAAC 786420 Query 20185 CTCACGAGACATGAGTCGAAAATCTCCGACATTTTCCTCGATCTTTGGGGTGCTTATTTT 20244 ||||| ||||| || || ||||| |||||||| || || |||| || ||| || | Sbjct 786421 TTCACGCGACATCAGCCGGAAATCACCGACATTCTCTTCTATCTGCGGATGGCTGATGCT 786480 Query 20245 GTTGTGTAATTTATAGAACCACTCAGCTGTCTTACGTTTCAGTCGTCCATCAGTTGAGCG 20304 ||| || | ||| || ||||| || || || ||||| || | ||||| | | Sbjct 786481 GTTATGCAGTTTGTAAAACCAGCGGGCGGTTTTGCGTTTGAGGTGGCCATCGGCACTTCT 786540 Query 20305 GTCTGAACGTTTAGCAAGCACCATGTCAGCACCTGCCTGCCACTTTTCAATAAGATGAGG 20364 ||| || || ||||| || || |||||||| ||| ||||||| | || | | ||| Sbjct 786541 GTCCATCCGCTTGGCAAGAACAATATCAGCACCCGCCAGCCACTTGTTGATCATCTCAGG 786600 Query 20365 GATAACCTCAATTGGGTCTTGCAGGTCGACATCAATAGGAATTACAGCATCGCCGCTTGC 20424 |||||| || ||||| || | || |||||||| || || || ||||||||| |||| Sbjct 786601 GATAACAGTGATGGGGTCCTGTAAATCCACATCAATCGGGATAACGGCATCGCCGGTTGC 786660 Query 20425 ATGGTCTAACCCTGCAAATAAGGCTGGTTCTTTACCAAAGTTGCGTGTAAATGACAGCGG 20484 || | || ||||| | || ||||| || || || || || |||| ||||| Sbjct 786661 GGCTTCCAGGCCGGCAAACAGCGCGGGTTCCTTGCCGAAATTACGAATAAACGACAGGCT 786720 Query 20485 AACAACTAGCGGGTCTGAAACAGCCAGCGCGTTAATAATTGACTCTGTGGCATCTTTACT 20544 || || ||||| || | ||| | |||| | | | || |||||| | || Sbjct 786721 AAGTACCAGCGGATCGCTCTGACTCAGTTGGGTAATCAGCGCATGCGTTGCATCTGTGCT 786780 Query 20545 TCCGTCATTTATGAATACAATTTCTACTTCATATGGCT-TCAACTCTTGGAATTCACGTA 20603 || |||| | || ||||| || || | | |||| || | ||| ||| | | Sbjct 786781 GCCATCATCAACAAAAACAATCTCAACCTGCCA-GGCTGCCAGCGCTTCATATTTTCTGA 786839 Query 20604 CCGTTTTATAGAAAACAGGTATCGCTTCTTCTTCATTGAAGACAGGAACGACAAGAGATA 20663 ||| | ||| |||| ||| || | || |||||||| || || || || || ||||| | Sbjct 786840 CCGCGTCATAAAAAAGAGGGATGACCTCCTCTTCATTAAATACCGGTACCACCAGAGAGA 786899 Query 20664 TTTTCATTTCGCATCCCTAAAGACAATGAACTTTGAATAGACGAAACCGCACACCAGACT 20723 |||||||| | | |||| || || || ||| | | || || ||| ||||||| Sbjct 786900 TTTTCATTATTCTCCTTTAAATACGATAAAGCGGGAAAAAAGAAAGCCACACGCCAGACT 786959 Query 20724 GATGGCGGAGAAGGTGATAAGAGT 20747 ||| || || ||||||| || || Sbjct 786960 GATAGCCGATGAGGTGATCAGCGT 786983 >seq174 Length=42168 Score = 132 bits (146), Expect = 1e-26 Identities = 191/265 (72%), Gaps = 17/265 (6%) Strand=Plus/Minus Query 36846 CATCATCGCTGACATGCAGAAGCGTCAACATGATGTAGCTGAACTCGACGCCAGATACAC 36905 || |||| || | ||||||| | | || | |||||| | | || || || | |||||| Sbjct 27059 CACCATCACTTATATGCAGACGAGACAGCGTGATGTGGACGCGCTTGATGCGAAATACAC 27000 Query 36906 AAAGGAGCTTGCTGATGCTAACGCGACTATCGAAAGTCTTC----GTGCTGATGTTTCTG 36961 |||||||| || ||||| || || | | || ||||| |||| ||| | Sbjct 26999 CAAGGAGCTGGCAGATGCCAAAGCTAAGCTTGATTCTCTTCAGCAGTGC----GTTAGTT 26944 Query 36962 CTGGTCGTAAGTG---GCTGCACGTCAAAGCAGTCTGTCCGGACAAGCATAAAACCACCG 37018 ||||| || || ||||| | |||| ||| |||| ||| | || ||| || ||| Sbjct 26943 CTGGT---AAATGCGGGCTGCGCCTCAACGCAATCTGCCCGAA--AGG-TAACGCCTCCG 26890 Query 37019 CCGCCTCCGGCGTGGATGATGCTTCCAGCCCCAGACTTACTGACACCGCTCAACGGGATT 37078 | || |||||||||||||||| ||||| || ||||||||||| ||||||||||||||| Sbjct 26889 GCACCACCGGCGTGGATGATGCAGCCAGCGCCCGACTTACTGACGCCGCTCAACGGGATT 26830 Query 37079 ATTTCGTTCTCAGAGAGCGCATCGA 37103 ||||| ||||||||||| ||||| Sbjct 26829 ATTTCACCCTCAGAGAGCGAATCGA 26805 Score = 95.1 bits (104), Expect = 3e-15 Identities = 229/344 (67%), Gaps = 2/344 (1%) Strand=Plus/Minus Query 37954 TGGAGCCAGCATGCCACCACGAACCCCAAAAGCCTGCCGTGTTCGCGGCTGCCGCCATAC 38013 ||||| | | ||||||| ||||| || | ||| ||||| | || ||| | | || Sbjct 23180 TGGAGACTGGATGCCACAACGAATACCGAGAGCATGCCGCAAGCATGGGTGCGGGAAGAC 23121 Query 38014 CACAACTGACCCGTCAGGCTATTGCGAAAGCCACAAAAGTGAAGGCTGGAAGCAATACAA 38073 |||||||| | ||||| || || | ||| | | ||| |||||| | || | | Sbjct 23120 AACAACTGATCGCTCAGGTTACTGTGCTGACCATATCAATGAGGGCTGGCAACAGCATCA 23061 Query 38074 GCCGGGCCAGTCCAGACACCAGCGCGGTTATGGTTCGAAATGGGATGTTATCCGTGAACG 38133 | || || ||| || ||||||| ||||| |||||||||| | |||| | Sbjct 23060 ACGCGGTCAAAGCAGGCATGAGCGCGGATATGGCAGTCAATGGGATGTCAGACGTGCGAG 23001 Query 38134 TGTGCTCAAGCGTGACAAAGGACTGTGTCAGTTATGTCTGCGTGGTGGT-GTGGTACGTG 38192 || || |||| || || |||||| || ||||| || | || Sbjct 23000 AGTTCTTGAGCGCGATCGGCACCTCTGTCAGGAGTGCCTGCGAAAGGGCAGACCCACAGC 22941 Query 38193 AGGCGAAAACCGTTGACCACATCATCCCTAAAGCGCATGGCGGCACTGATGCCGACAGCA 38252 || | || || |||||||||||||| || ||||| ||||| || || |||| |||||||| Sbjct 22940 AG-CTAAGACGGTTGACCACATCATTCCGAAAGCACATGGGGGTACCGATGACGACAGCA 22882 Query 38253 ATCTGCAGAGCCTGTGCTGGCCGTGTCATAAGGCGAAGACGGCC 38296 | || ||| ||||||||||||| || ||||| ||||| ||| Sbjct 22881 ACCTTCAGGCTTTGTGCTGGCCGTGCCACAAGGCAAAGACAGCC 22838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122713918214278