Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_027398.1 Length=38742 Score E Sequences producing significant alignments: (Bits) Value seq174 87.8 4e-13 >seq174 Length=42168 Score = 87.8 bits (96), Expect = 4e-13 Identities = 189/280 (68%), Gaps = 12/280 (4%) Strand=Plus/Minus Query 19381 CATGATTTCAGAAGAACGCTTGTTACACGTCTGTCCGAGATGAATG--TCGAGCCTCATG 19438 ||||| ||| | |||||| | | ||| ||| | | ||| ||| | | | ||| |||| Sbjct 40968 CATGACTTCCGCAGAACGATGGCTACTCGTTTAGCAGAG--GAAGGGATTGCGCCCCATG 40911 Query 19439 TTACTGAGCGAATGCTCGGTCATGAACTTGGCGGGATAATGTCCGTATACAATAAACACG 19498 | | |||| |||||| || ||||| ||||| || | | | || || || || |||| Sbjct 40910 TCATTGAGAAAATGCTGGGGCATGACCTTGGAGGAGTGCTTGCAGTTTATAACAAGCACG 40851 Query 19499 ACTGGATAGAGGCTCAGCGCAAAG----CGTATGAGCTTCACGCTGATAAATTGTTCTGG 19554 | ||| ||| || || |||| | ||||| ||| ||||||| || | || | Sbjct 40850 ATTGGTTAGCGGAACA----AAAGGTTGCTTATGAACTTTACGCTGACAAGATTTTTGAG 40795 Query 19555 CACATCAGGAGCATTTCTGATTAACGCCACCGTTAAGAATCCACCCCTCAACAGCTTCAC 19614 || |||| | || ||||||||||||| ||||| | ||||||| ||| || | | Sbjct 40794 CAGATCAAGCTGATCTCTGATTAACGCCGCCGTTTAAAATCCACTGCTCTACCTCAGCCA 40735 Query 19615 GAAGGTATGATTTGGGGTGGGTTCTGACTGGCTTCGGAAA 19654 | | |||| ||| ||| | |||| ||||| || || || Sbjct 40734 GTAAGTATTTTTTTGGGCGATTTCTTACTGGTTTGGGGAA 40695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123843432780512