Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_027984.1 Length=57677 Score E Sequences producing significant alignments: (Bits) Value seq174 138 4e-28 seq4 102 3e-17 seq9 96.9 1e-15 >seq174 Length=42168 Score = 138 bits (152), Expect = 4e-28 Identities = 232/331 (70%), Gaps = 16/331 (5%) Strand=Plus/Minus Query 27775 ATTACCGTGACAACGCGCTCACCTACAAAGCGCAGCGCGATAAAAAAGCCAGAGAGCTGG 27834 ||||||| | ||| || | |||||| |||||||| || | | ||| || Sbjct 27132 ATTACCGAGGCAATGCCATTGACTACAAGGCGCAGCGTGACACGGCAAGCAGCAGCCTAA 27073 Query 27835 AACAGGCGAATGCCACCATTACTGACATGCAGGTGCGCCAGCGTGATGTTGCTGCGCTCG 27894 | | ||| |||| |||||| ||| | |||||| | | ||||||||||| | ||||| | Sbjct 27072 AGCTGGCTAATGACACCATCACTTATATGCAGACGAGACAGCGTGATGTGGACGCGCTTG 27013 Query 27895 ATGCAAAATACTCGAGGGAGTTAGCCGATGCGAGAGCTGAAAATGAAACTCTGC----GT 27950 |||| |||||| | | |||| | || ||||| | |||| | ||| |||| | || Sbjct 27012 ATGCGAAATACACCAAGGAGCTGGCAGATGCCAAAGCTAAGCTTGATTCTCTTCAGCAGT 26953 Query 27951 GCTGATGTTGCCGCTGGTCGTAAGCGC-CTGCGGATCAACGCCACCTGCTCCGGTACCGT 28009 || ||| ||||| | ||| ||||| ||||||| | |||| ||| | Sbjct 26952 GCGTTAGTT----CTGGTAA-ATGCGGGCTGCGCCTCAACGCAATCTGC-CCGAAAG--- 26902 Query 28010 GCGTGAAGCCACCGGCACCTCCGGCGTGGATAATGCAACCGGCCCCCGACTGGCAGACAC 28069 || | ||| |||||||| ||||||||||| ||||| || || ||||||| | ||| | Sbjct 26901 --GTAACGCCTCCGGCACCACCGGCGTGGATGATGCAGCCAGCGCCCGACTTACTGACGC 26844 Query 28070 CGCTGAACGGGATTATTTCATCCTCAGAGAG 28100 |||| ||||||||||||||| |||||||||| Sbjct 26843 CGCTCAACGGGATTATTTCACCCTCAGAGAG 26813 Score = 120 bits (132), Expect = 1e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 1240 TTTATCTGGGGAAGGAATTATGCCCCACGTCACTGAAAAAATGCTGGGGCATGAACTGGG 1299 |||| | | |||||| ||| |||||| |||| ||| ||||||||||||||||| || || Sbjct 40939 TTTAGCAGAGGAAGGGATTGCGCCCCATGTCATTGAGAAAATGCTGGGGCATGACCTTGG 40880 Query 1300 AGGAGTGATGGCCGTGTATAATAAACACGACTGGTTGTCGGAACAGAAAGATGCGTATGA 1359 ||||||| | || || ||||| || ||||| ||||| ||||||| || | ||| ||||| Sbjct 40879 AGGAGTGCTTGCAGTTTATAACAAGCACGATTGGTTAGCGGAACAAAAGGTTGCTTATGA 40820 Query 1360 GTTGTATGCTGATAAAATTTT 1380 | || ||||| || ||||| Sbjct 40819 ACTTTACGCTGACAAGATTTT 40799 >seq4 Length=447486 Score = 102 bits (112), Expect = 3e-17 Identities = 70/79 (89%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 21679 GGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAAT 21738 ||||| ||||||||||||| ||||| ||||||||||||||| ||||||||||||||| Sbjct 299226 GGCCCCTTAGCTCAGTGGTTAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAAC 299285 Query 21739 CCAGCAAGGGCCACCATAT 21757 |||||| ||||||||| || Sbjct 299286 CCAGCAGGGGCCACCAAAT 299304 >seq9 Length=205880 Score = 96.9 bits (106), Expect = 1e-15 Identities = 170/244 (70%), Gaps = 13/244 (5%) Strand=Plus/Plus Query 11626 TTTCATTCTGAACCATGAGTACGATACTAAAGCACTTGCAAAAACTTTCAGTTCAACCAT 11685 |||| | ||||||||| |||| || ||| ||||| |||||| ||||||||| | Sbjct 173488 TTTCTGTTTGAACCATGGGTACAATGTTAACTGACTTGATAAAACTGTCAGTTCAAAT-T 173546 Query 11686 AATACGTACTGAAAGTACGAAAAAGGA--TATTCCT---ATGCAA-AATCTTGATGAGCC 11739 || | ||||||||||| | ||| | ||| | || || || |||| | Sbjct 173547 AAAGTGAACTGAAAGTACTATTGAGGGGGTTTTCATGTCATTCATTAACCTTG------C 173600 Query 11740 GATTAAAGGTGTCGGCATCCCTGAAGTTGCGAAGGCTTGTGGAGTTAGCGAAAGGGCTGT 11799 ||||| ||| || | ||||||||||||| || |||||| | || ||| || || Sbjct 173601 AATTAAGTCTGTGGGAGTTGCTGAAGTTGCGAAAGCGTGTGGAATCAGTCCAAGAGCGGT 173660 Query 11800 CTATAAGTGGCTCAAAAACGGCTTCCTCCCTAAGACTGAGTTTTTTGGGAAAACTAAATA 11859 ||| ||||||||||| || || | || ||||| || ||||||| |||| |||| |||| Sbjct 173661 CTACAAGTGGCTCAACAAGGGTTCACTTCCTAAAACAGAGTTTTATGGGGGAACTCAATA 173720 Query 11860 CGCA 11863 ||| Sbjct 173721 TGCA 173724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 184430850093942