Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_027995.1 Length=41666 Score E Sequences producing significant alignments: (Bits) Value seq174 122 2e-23 seq3 116 1e-21 >seq174 Length=42168 Score = 122 bits (134), Expect = 2e-23 Identities = 223/318 (70%), Gaps = 9/318 (3%) Strand=Plus/Plus Query 2612 AGGCGCGCATAGGCTTTGGCGCGTTCCAGCGGTTCCAGTGGCTTG-CCCTGGCTGCTGGT 2670 |||||| |||||| || ||||||||||| ||| |||| | ||||| || ||||| Sbjct 31937 AGGCGCTGATAGGCGGCTGCACGTTCCAGCGGCAACAG-GGCTCGGCCCTGACTACTGGT 31995 Query 2671 GACCATCAGCGCGATTTTGTCAGCCTCACTGGTGCCGGTGATGTCGTT-CACTTCCAGAC 2729 |||||| | || | |||| || |||||| || || ||| || |||| | || | Sbjct 31996 GACCATGAATGCCACGCTGTCGGCTTCACTG---CCCACGAAGTCCTTACACT-CAAGGC 32051 Query 2730 GCAGT-TCCATGCCGGTTTCTGCGGCCATCTTGGCACCGGCAAAGCGGTGGTGGCCGTCA 2788 |||| | | ||| || ||| | ||| ||| |||||| | ||||||| ||||| || Sbjct 32052 GCAGCGTATAGCCCGCTTCCTGAG-CCAGCTTTGCACCGTAATAGCGGTGATGGCCATCG 32110 Query 2789 ATCACCTTGATGCCATGCTGCGTCACTTCCACGGTCAGCGGAGGCACATATTCACCTGCC 2848 || | ||| ||||| | | || || | || | |||||||||||| | |||||| || Sbjct 32111 ATGATCTTAATGCCCTTTTCGGTGACCTTAACAGCCAGCGGAGGCACGTGTTCACCAGCG 32170 Query 2849 AGGTACGCATCGCGGAATTCTTCAACGTGCGCCTGGTCCACGTCGCGGATGTTGTAGCCA 2908 | | | || ||||| || || || || || | ||| || | || ||||||||||| | Sbjct 32171 ATGAAGGCGTCGCGAAACTCCTCGACATGAGTCTGATCGATATCACGGATGTTGTAATTA 32230 Query 2909 TCTTCCACATACAGTTCA 2926 ||| |||||||| ||| Sbjct 32231 GTTTCTACATACAGCTCA 32248 >seq3 Length=630259 Score = 116 bits (128), Expect = 1e-21 Identities = 181/256 (71%), Gaps = 2/256 (1%) Strand=Plus/Plus Query 41205 GATCCAGAAATCCGTTACATGCCAAGCGGCGGCGCGGTTGCTAATCTAAGCATCGCCACA 41264 ||||| ||| | ||||| ||||||| || ||||| ||||| || | | | || || Sbjct 50861 GATCCGGAAGTACGTTATATGCCAAATGGTGGCGCTGTTGCCAACATTACGCTGGCTACG 50920 Query 41265 ACTGAAAGCTGGAAGGATAAAACCACCGGCGAGAAGAAAGAACAAACGGAATGGCACCGC 41324 | ||||||||| || || ||||| || || ||||| || || |||||||| Sbjct 50921 TCGGAAAGCTGGCGCGACAAGCAGACCGGTGAAAACAAAGAGATCACTGAGTGGCACCGT 50980 Query 41325 GTTGTCATCTTCGGTAAGCTGGCAGAAATTGCTAGCGAATACCTGCGCAAAGG-TAGCAA 41383 || || | || || || ||||| ||| | || | ||||||||| ||||| | ||| Sbjct 50981 GTGGTGCTGTTTGGCAAACTGGCTGAAGTCGCGGGTGAATACCTGAAAAAAGGATCGCA- 51039 Query 41384 GGTGTTCATTGAAGGCAGCCTGCGAACGCGTAAATGGCAGGACCAGGCTGGCGTTGATCG 41443 ||| | || |||||| ||||| || |||||||||||||| |||| |||| || || Sbjct 51040 GGTCTATATCGAAGGCCAGCTGCGCACCCGTAAATGGCAGGATCAGGGTGGCCAGGAGCG 51099 Query 41444 CTACACCACTGAAATC 41459 |||||||| ||| || Sbjct 51100 TTACACCACCGAAGTC 51115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133199525108184