Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq575 188 9e-43 seq3 87.8 2e-12 >seq575 Length=9735 Score = 188 bits (208), Expect = 9e-43 Identities = 562/859 (65%), Gaps = 10/859 (1%) Strand=Plus/Minus Query 118710 GCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCC 118769 ||||| || |||| || || || | | ||| ||| | | |||||| || || || Sbjct 3018 GCGATCGAGGCCAAGTTGCAGACGGCGCACTCGTCCGGCGCCGAGTACTCGATGATCTCG 2959 Query 118770 GTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACAC 118829 ||||||| ||| || ||| || ||||| | |||||||| || || || |||| Sbjct 2958 GTGCACAGGTTCGACGACTTGATCGTGCCAAGATTCTTTTGGTTCGATTTCTTGTTCGCG 2899 Query 118830 GCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 118889 || || ||||| ||||| | || | || || || |||| | ||||| || | | Sbjct 2898 GCGTCTTTGTAGAGCATAAAAGGGTTGCCAGTTTCGACCTGGGCTTCAAGAATCGCGTAC 2839 Query 118890 CAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTA 118948 || | | | || || || | || ||||| || ||||| | ||||| || | | Sbjct 2838 CAAAGCTTTTGC-GCGGGGATCGTTTTCTTGGCGCGGCCCTCCTTTTCGTATTTCTCGAA 2780 Query 118949 GAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAA 119008 | ||| ||||| || || | | || ||| || || || | | |||||||| Sbjct 2779 CAAGGCGCGGAACTCCTCGCCATAGACTTCGTGGAGGCCGGGGGCTTCGGCGGGGCAGAA 2720 Query 119009 GAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGC 119068 ||||| ||| | || | |||| || |||| |||||| || || || ||||||||||| Sbjct 2719 GAGAGGCCAATCGCCGGCGGCCTCGACACGCTCCATGAAAAGATCGGGAATCCAGAGCGC 2660 Query 119069 CGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAA 119128 |||||||||| ||| |||| |||| || | || || || || | |||| || Sbjct 2659 AAAGAAGAGATCACGAGCGCGAACTTCCTCCTTGCCGTGGTTCTTGCGAAGGTCCAGGAA 2600 Query 119129 GTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACG 119185 || | || || ||||||||||| || ||||| | ||||| | || ||| Sbjct 2599 TTCGAAGACGTCGGCGTGCCACGGCTCGAGGTAGATCGCGAAGGCTCCGGGACGCTTGTT 2540 Query 119186 ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACC 119245 ||| | |||| || || | ||| ||| ||| | ||||| ||||| || | || || Sbjct 2539 GCCACCTTGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGGACAATGCC 2480 Query 119246 ATCGGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTATTGGCTCTGACATCGTGGATG 119303 | || | ||| ||||| || ||| || ||| | | || | || | ||||||| Sbjct 2479 GTTCGAGTAGCCGTTTGTGCCGGCGATGTAGGAGCC--GGTCGCGCGGATGTTGTGGATG 2422 Query 119304 TGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAG 119363 || ||| ||||| || || ||| ||||| |||||||| | | || || |||| Sbjct 2421 CTCAAACCGATACCGCCGGCGGTCTTGGAGATGAGCGCGCACGTCTTAAGCGTGTCGTAA 2362 Query 119364 ATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTG 119423 || || || ||||| ||| |||| | | || ||||| ||| ||| | || || Sbjct 2361 ATGCCTTCAATCGAATCATCCTTCATCGTGACCAGGAAACAGGACGAAAGCTGCGGGTGA 2302 Query 119424 GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTG 119483 || || || ||||||||||| || || | |||||| | || | | |||||| | Sbjct 2301 GGCGTTCCGGCGTTGAAGAGCGTCGGCGAGGCGTGGGTAAAGTAGCGCTCGGACATAAGG 2242 Query 119484 TCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATA 119543 | ||| | || ||||||| |||||| | ||||| || |||| | ||| ||||| Sbjct 2241 TTGTACGACTGCAAGACGCGCTCAATGTCGTGACCGTGGATGCCGACGGCGACACGCATG 2182 Query 119544 AACATGTATTG-GGGTGTT 119561 | ||||| ||| ||| ||| Sbjct 2181 AGCATGTGTTGCGGGCGTT 2163 >seq3 Length=630259 Score = 87.8 bits (96), Expect = 2e-12 Identities = 224/335 (67%), Gaps = 12/335 (4%) Strand=Plus/Minus Query 14018 ATCTTCTCGCGACCGCGCACACTGGGTAGGGACACGGTGATCTTACGATCAAAGCGACCT 14077 |||| ||| |||||||| ||| || ||| || | || ||| |||||||| ||| Sbjct 203163 ATCTGCTCACGACCGCGAACATCTGGCAGGCCAACAACAACCTGACGGTCAAAGCGTCCT 203104 Query 14078 GGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATG 14137 || || || || || ||| |||| ||| ||||| || || ||||| || | || Sbjct 203103 GGACGCAGCAGCGCAGGGTCCAGGACGTCAGGACGGTTAGTTGCGGCGATAACGATAATA 203044 Query 14138 CCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCG 14194 || || ||| || || |||||||||||| || | || || | || || || Sbjct 203043 CCT---TCATTACCTTCGAAACCATCCATCTCAACCAGCATCTGGTTCAGCGTCTGCTCA 202987 Query 14195 CGTTCATCATTCGCAG-GCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTC 14253 ||||| |||| || || || ||| || | || || |||||| ||||| || || Sbjct 202986 CGTTCGTCATGTCCACCGCCTAA-ACCGGCGCCACGCTGACGACCGACTGCGTCGATCTC 202928 Query 14254 ATCGATGAAAACGATACATGGTT--GATTTTCACGGGCAACTTCAAAGATATCTCGCACT 14311 |||||| || | ||| ||||| | |||| ||| ||| || || || ||||| Sbjct 202927 ATCGATAAAGATGATGCATGGAGCCGCTTTTTT--GGCCTGTTCGAACATGTCACGCACA 202870 Query 14312 CTCTTGGCACCGACACCCACAAACATCTCCACAAA 14346 | ||||||||||| |||||||| || ||||| Sbjct 202869 CGGGATGCACCGACACCGACAAACATTTCAACAAA 202835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618385964827640