Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq575 277 2e-69 seq326 132 5e-26 seq1 107 2e-18 >seq575 Length=9735 Score = 277 bits (306), Expect = 2e-69 Identities = 522/765 (68%), Gaps = 2/765 (0%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| |||||| | || ||||||||| ||||| ||| ||| || ||||| Sbjct 2181 TCATGCGTGTCGCCGTCGGCATCCACGGTCACGACATTGAGCGCGTCTTGCAGTCGTACA 2240 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 || | ||| | | |||||||| |||||| |||| || || |||||||| || ||| Sbjct 2241 ACCTTATGTCCGAGCGCTACTTTACCCACGCCTCGCCGACGCTCTTCAACGCCGGAACGC 2300 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 |||||| ||| | ||| ||| |||||||| ||||||||||||| ||||| || |||| Sbjct 2301 CTCACCCGCAGCTTTCGTCCTGTTTCCTGGTCACGATGAAGGATGATTCGATTGAAGGCA 2360 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 | ||||| ||||| ||| ||| || | |||||||||| | || ||||||||| | Sbjct 2361 TTTACGACACGCTTAAGACGTGCGCGCTCATCTCCAAGACCGCCGGCGGTATCGGTTTGA 2420 Query 53433 ACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATG 53492 | | ||| |||| |||| |||| | ||| || || |||||| | | | | Sbjct 2421 GCATCCACAACATCCGCGCGACCGGCTCCTACATCGCCGGCACAAACGGCTACTCGAACG 2480 Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552 | || || || |||||||| |||| ||||||||| || || |||||| |||| ||||| Sbjct 2481 GCATTGTCCCCATGCTCCGTGTCTACAACAACACCGCGCGCTACGTCGACCAAGGTGGCA 2540 Query 53553 GGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612 ||||| || | ||||| ||||||||||||||||||||||||||| | | || | Sbjct 2541 ACAAGCGTCCCGGAGCCTTCGCGATCTACCTCGAGCCGTGGCACGCCGACGTCTTCGAAT 2600 Query 53613 TTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAG 53672 | || || || || ||| || || | || || | ||| ||||| || || | Sbjct 2601 TCCTGGACCTTCGCAAGAACCACGGCAAGGAGGAAGTTCGCGCTCGTGATCTCTTCTTTG 2660 Query 53673 CTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGA 53732 | || |||||||| || || |||||| | || ||| | || || ||| || Sbjct 2661 CGCTCTGGATTCCCGATCTTTTCATGGAGCGTGTCGAGGCCGCCGGCGATTGGCCTCTCT 2720 Query 53733 TGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGT 53792 | ||||| ||| |||||||||||| | ||||| || |||||||| || ||| Sbjct 2721 TCTGCCCCGCCGAAGCCCCCGGCCTCCACGAAGTCTATGGCGAGGAGTTCCGCGCCTTGT 2780 Query 53793 ATCG-GACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGG 53851 ||| || |||| | |||||||| |||||| | | || |||| || | ||| Sbjct 2781 -TCGAGAAATACGAAAAGGAGGGCCGCGCCAAGAAAACGATCCCCGCGCAAAAGCTTTGG 2839 Query 53852 GATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCG 53911 | || || || | |||||| || || || | || | ||| |||||| || | Sbjct 2840 TACGCGATTCTTGAAGCCCAGGTCGAAACTGGCAACCCTTTTATGCTCTACAAAGACGCC 2899 Query 53912 GTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCG 53956 | ||| |||| ||||| ||||| | ||| ||||| ||| Sbjct 2900 GCGAACAAGAAATCGAACCAAAAGAATCTTGGCACGATCAAGTCG 2944 Score = 109 bits (120), Expect = 6e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 55726 TCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAG 55785 |||||||| || ||| ||| || |||||| | | || |||| | | || ||| || Sbjct 3896 TCTCAAGGCCATCTACAAGACCGTCTGGGAGCTCTCGCAAAAGACTATTATCGACTTGTC 3955 Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC 55845 || || || ||||| | ||| |||||||| || || || |||||| | || || || Sbjct 3956 CGCCGACCGAGGTGCCTTCATTGACCAGTCGCAATCGCTTAACATCCACTTGTCGAGCCC 4015 Query 55846 TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905 | |||| || | | ||||||||||| ||||| ||||||| ||||| |||||||| Sbjct 4016 AACGATGGCGCAGCTCACGTCGATGCACTTCTACGGCTGGAAGAGAGGACTGAAGACGGG 4075 Query 55906 TATGTACTATCTGCGGACCCGCGCC 55930 |||||||| |||| || || ||| Sbjct 4076 CATGTACTACTTGCGCACGCGGGCC 4100 >seq326 Length=22253 Score = 132 bits (146), Expect = 5e-26 Identities = 277/407 (68%), Gaps = 8/407 (2%) Strand=Plus/Minus Query 151874 ATCCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAA 151933 |||| || || || ||||| | || ||||||| | ||| || | || ||| ||| Sbjct 10808 ATCCCGTTCCAATACCCTCCGAGCCATTGACCAAAGCCATGGGGATGATGGGGATGTACC 10749 Query 151934 ACTCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCG 151993 | |||||| | ||| || ||||| | | ||||| | ||| | ||||| | Sbjct 10748 AAGACGGCTCGATGCTTTGCCCATCATCGTTGAGGTATTCGAGCACGCTGTCATCAGCGG 10689 Query 151994 GATCGAATATCCGTCGAGTCATAGGACTCAAACG--CGTGAAGATGTATCGGGAGCTG-- 152049 ||| ||| | | || || || ||| | | ||| |||||||||||| || ||| | Sbjct 10688 GATGGAAGACGCTACGCGTGAT-GGA-TGATACGTTCGTGAAGATGTAACG--AGCCGAA 10633 Query 152050 GCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTG 152109 ||||| || || |||||| ||| ||||| ||||| || || || ||||| | |||| Sbjct 10632 GCCGCGTCTTTACCACCTTGCAGACGCGTACCAAATTGACCGTTCGGGTCGAGAATGTTG 10573 Query 152110 AGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCT 152169 |||||||||| || ||||| | || |||| | || ||||| |||| |||| | Sbjct 10572 AGGTTGTTGGACCCGACGAACTGTTGCGCCAGGCCGATGATGGTGCCTTGCAAACTCATT 10513 Query 152170 TCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATG 152229 |||||||| || ||||||| ||||| |||| ||| || |||| || | ||||| || Sbjct 10512 TCACCGTGATGGTACGCCGAGTGCTCGGCGACGTAACCGCCCAATTGTCCGACCTTGATC 10453 Query 152230 TCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTG 152276 ||| ||||| || ||||| || || | | |||||||| || Sbjct 10452 TCCTGCGTCAACTTGCGCTTGAAGCAACCGAACAAGACCTTGCGTTG 10406 Score = 105 bits (116), Expect = 7e-18 Identities = 183/266 (69%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||||| || || || || ||||| ||||||||||| ||||| Sbjct 10653 GTGAAGATGTAACGAGCCGAAGCCGCGTCTTTACCACCTTGCAGACGCGTACCAAATTGA 10594 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || |||| || | | ||| |||||||||| || || || | ||| |||| | || Sbjct 10593 CCGTTCGGGTCGAGAATGTTGAGGTTGTTGGACCCGACGAACTGTTGCGCCAGGCCGATG 10534 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 || || ||||| | ||| ||||| || || ||||||| ||||| || ||||| || Sbjct 10533 ATGGTGCCTTGCAAACTCATTTCACCGTGATGGTACGCCGAGTGCTCGGCGACGTAACCG 10474 Query 117485 GCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACC 117544 ||| || | ||||| || || ||||| || ||||| ||| | | | ||| Sbjct 10473 CCCAATTGTCCGACCTTGATCTCCTGCGTCAACTTGCGCTTGAAGCAACCGAACAAGACC 10414 Query 117545 TTGCGCTGACTTGGCTTCAGACCATC 117570 ||||| |||| ||||| | ||||| Sbjct 10413 TTGCGTTGACCCGGCTTAAACCCATC 10388 Score = 86.0 bits (94), Expect = 7e-12 Identities = 87/111 (78%), Gaps = 2/111 (2%) Strand=Plus/Minus Query 119083 GTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTGCTCCTCGTCGTT 119142 |||||| | |||||| ||||| ||||||| ||||||||| || || ||||||||||| Sbjct 8635 GTTGGCCAACTTGGCTCCGTAACCGTTCCTACCACCGGTGACCTTCTCCTCCTCGTCGTC 8576 Query 119143 GTAGTTGGAGCTGGTCAAAAG-GTGCCCAAAGATGAGCTCGGGGATCCAAA 119192 |||||||| ||| | || ||| |||||||| | || |||||||||| Sbjct 8575 ATAGTTGGAAGAGGTAAGCAGAGTG-CCAAAGATCATTTCCGGGATCCAAA 8526 >seq1 Length=970878 Score = 107 bits (118), Expect = 2e-18 Identities = 226/333 (68%), Gaps = 23/333 (7%) Strand=Plus/Minus Query 159004 TGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCA 159063 || ||||| |||||||| | || || || |||| || |||||||| || ||||| Sbjct 320664 TGCAGCATACGCCACATGCCTTCAACATATTCCTTAGCAAAGCCCCAGTCACGTTTGGCG 320605 Query 159064 TCCATGTTCCCGAGCTCGATGACTT-----TTCCAGA-CTT--TTTCCACTCAGCCAGAC 159115 |||||||| || | ||| | || | || | || ||| ||| || || Sbjct 320604 TCCATGTTACCTAACTCAAGCACATCCAGCTTACCGAGCTTAATTTTTGCT-------AC 320552 Query 159116 CGAGC--GTGATCTTGCGCGTCACAAACTCTGCTCCGCGCCGTTCCGACTCATGGTTAAA 159173 ||| |||||||| || ||||||||||| ||| ||| || || ||||||||||| Sbjct 320551 CGAATCAGTGATCTTACGGGTCACAAACTCCTGTCCACGCAGTGGGGATTCATGGTTAAA 320492 Query 159174 CAGAATGCCGGTACAAGCGAACAGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAGTA 159233 |||||| ||| | | ||||| | ||| ||| ||| ||||| || | || ||||||| Sbjct 320491 CAGAATTCCGCTTGATGCGAAGATGTTGTAGCTCTCACGGTAGTTAATTGTCATCCAGTG 320432 Query 159234 TCCAAAGAGCTTGGAGACGCCGTATGGACTCCGAGGATAAAATGGTGTCCCCTCATTTT- 159292 || | | ||| | || || || || || || ||||| || ||||| |||| || | Sbjct 320431 GGCATACAACTTAGCAACACCATACGGGCTACGCGGATAGAAAGGTGTATCCTCTTTCTG 320372 Query 159293 --GAATTGGTTCCTGAACCTTTCCAAACATTTC 159323 |||| | |||| || || |||||||| || Sbjct 320371 CGGAATAG---CCTGCACTTTACCAAACATCTC 320342 Score = 93.3 bits (102), Expect = 5e-14 Identities = 237/359 (66%), Gaps = 9/359 (3%) Strand=Plus/Minus Query 124553 CTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGC 124612 ||||| |||| |||||||| ||| || || |||| || |||||||| || ||||| Sbjct 320665 CTGCAGCATACGCCACATGCCTTCAACATATTCCTTAGCAAAGCCCCAGTCACGTTTGGC 320606 Query 124613 ATCCAGGTTTCCGAGCTCGATTG------GCTTGGCCGTCTTGTTCCACTCCGCCAAACC 124666 |||| ||| || | ||| | |||| | ||| | | || || | Sbjct 320605 GTCCATGTTACCTAACTCAAGCACATCCAGCTTACCGAGCTTAATTTTTGCTACCGAATC 320546 Query 124667 CAGTGTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAG 124726 |||| ||||| || ||||||||||| || || | || || ||||| ||||| Sbjct 320545 -AGTG--ATCTTACGGGTCACAAACTCCTGTCCACGCAGTGGGGATTCATGGTTAAACAG 320489 Query 124727 AATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACCC 124786 ||| || | | || || || ||| ||| |||||||| | |||||||| | | Sbjct 320488 AATTCCGCTTGATGCGAAGATGTTGTAGCTCTCACGGTAGTTAATTGTCATCCAGTGGGC 320429 Query 124787 AAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTCATTTTGGGT 124846 | | | ||| | || ||||| ||||| || || ||||| || || | || || || | Sbjct 320428 ATACAACTTAGCAACACCATACGGGCTACGCGGATAGAAAGGTGTATCCTCTTTCTGCGG 320369 Query 124847 AGGTTGCTGAATCTTCCCAAACATCTCCGAAGTACCCGCCTGATAGAATTTGAATTTTG 124905 | ||| | || ||||||||||| |||||| ||||||||||||| || ||||| Sbjct 320368 AATAGCCTGCACTTTACCAAACATCTCTGAAGTAGACGCCTGATAGAATCGGATTTTTG 320310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547172434766200