Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_028448.1 Length=167467 Score E Sequences producing significant alignments: (Bits) Value seq13 196 5e-45 seq2 129 6e-25 seq1 120 3e-22 seq795 82.4 8e-11 >seq13 Length=199142 Score = 196 bits (216), Expect = 5e-45 Identities = 150/178 (84%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 3812 ACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAA 3871 ||| |||||||||||||| | || |||||||||||||| || || || || |||||||| Sbjct 145330 ACTTTCAGTAAAGGTACGGGTAATCACGTCGCGCTGCTGCTCAGGCGTGAGTGAGTTAAA 145389 Query 3872 GCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAAC 3931 || || ||||| || || || ||||| |||||||||||||| ||||| ||||| ||||| Sbjct 145390 ACGCACGGCATAGCCTGAAACGCGGATAGTCAGCTGCGGATAGTTTTCAGGATGTTTAAC 145449 Query 3932 TGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCA 3989 |||||||||||| ||||| || ||||||||||| |||||||| || || ||||||||| Sbjct 145450 TGCATCTTCCAGCGTTTCGCGGCGCAGAACGTTGACGTTCAGATGCTGTCCACCTTCA 145507 >seq2 Length=722220 Score = 129 bits (142), Expect = 6e-25 Identities = 133/174 (76%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 3815 CTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCG 3874 || ||| ||||| || | || || || ||||||| || |||||| ||||||||||| Sbjct 515055 CTTAGTGAAGGTTCGGGTAATCACATCCTGCTGCTGCTCTTTAGTCAGTGAGTTAAAGCG 515114 Query 3875 AACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGC 3934 || || |||||||| || || |||||||| ||||||||||| || ||||| | | || Sbjct 515115 CACAGCGTAACCGGAAACGCGAATGGTCAGTTGCGGATATTTCTCTGGATGTTCCATCGC 515174 Query 3935 ATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTC 3988 ||| ||| ||||||| || |||||||||||| ||||| ||||| ||||| Sbjct 515175 ATCCAGCAGCATTTCACGGTTCATAACGTTAACGTTGAGGTGCTGACCGCCTTC 515228 >seq1 Length=970878 Score = 120 bits (132), Expect = 3e-22 Identities = 204/293 (70%), Gaps = 2/293 (1%) Strand=Plus/Plus Query 81503 TTCAGCTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTT 81562 || ||||| |||||||| ||||| ||||| | |||||| |||| || || ||| || Sbjct 158273 TTGAGCTGTACACCATAGTCCATGTGACGCACGCGGTTGCCTTCAACACCACGGTTGTTC 158332 Query 81563 TTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATA-AGCAGTAGCAGC 81621 |||| || || || |||| | ||||| |||||| || || || | ||| || || || Sbjct 158333 TTCAGCACCAGCAGGCTTTCGATTTCCAGATGCCACATCGGGTAGAACAGC-GTGGCTGC 158391 Query 81622 GCCGCCACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATGTTTCCAAAA 81681 ||||||||||| || ||||| ||||| || || || || ||||| ||||| || | || Sbjct 158392 GCCGCCACGAACGCCGCCCTGAGAACAGGACTTCACCGCGGTCTGGAAATGCTTGTAGAA 158451 Query 81682 AGGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTCAGCACGAAT 81741 || ||| || |||||| ||||||| || |||| || ||||| || Sbjct 158452 CGGGATACAGCCGGTATGGAACGCTTCACCGCCGCGAATCGGGCTGCCCAGCGCACGGAT 158511 Query 81742 CATACCTACGTTAATTCCAATTCCAGCGCGTTTAGAAATATATTCAACAATTG 81794 ||| |||| || || || || || || | ||| | ||||| ||||||| Sbjct 158512 ACGACCGGCGTTGATACCGATGCCGGCACGCTGAGAGACATATTTCACAATTG 158564 >seq795 Length=5257 Score = 82.4 bits (90), Expect = 8e-11 Identities = 89/114 (78%), Gaps = 7/114 (6%) Strand=Plus/Minus Query 12783 GCGCTCTACCAAACTGAGCTACACGGAGTAAATTAAATTGGAGCGGATAATGAGAATCGA 12842 |||||||||||| |||||| | | || | || |||||||| | | ||||||| Sbjct 4406 GCGCTCTACCAA-CTGAGCCATATC-AGCACATC----TGGAGCGGGCAGCGGGAATCGA 4353 Query 12843 ACTCACATCATCAGATTGGAAGTCTGAGGTAATA-CCATTATACGATATCCGCA 12895 || | ||||||||| ||||||| ||||||||||| |||||||||||| ||||| Sbjct 4352 ACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCCATTATACGATGCCCGCA 4299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535723746297480