Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_028449.1 Length=63569 Score E Sequences producing significant alignments: (Bits) Value seq174 154 6e-33 seq4 102 3e-17 >seq174 Length=42168 Score = 154 bits (170), Expect = 6e-33 Identities = 233/328 (71%), Gaps = 10/328 (3%) Strand=Plus/Minus Query 33627 ATTACCGCGATAACGCCATAACCTACAAAGAGCAGCGCGATAAAAAAGTCAGTGAGCTGG 33686 ||||||| | || ||||| |||||| | |||||| || | | ||| || Sbjct 27132 ATTACCGAGGCAATGCCATTGACTACAAGGCGCAGCGTGACACGGCAAGCAGCAGCCTAA 27073 Query 33687 AGCTGGCAAATGCAACCATTACTGATATGCAGCAGCGCCAGCGTGATGTTGCTGCACTTG 33746 ||||||| |||| ||||| ||| |||||||| | | ||||||||||| | || |||| Sbjct 27072 AGCTGGCTAATGACACCATCACTTATATGCAGACGAGACAGCGTGATGTGGACGCGCTTG 27013 Query 33747 ATGCCAGATACTCGAGGGAATTAGCCGATGCGAGAGCTGAAAATGAAACTCTTC-GCGCT 33805 |||| | |||| | | ||| | || ||||| | |||| | ||| |||||| || | Sbjct 27012 ATGCGAAATACACCAAGGAGCTGGCAGATGCCAAAGCTAAGCTTGATTCTCTTCAGCAGT 26953 Query 33806 GACGTTGCCGCTGGTTACCGCAGCCTGCGGATCAACGCCACCTGTCCAGGTCCCGTGCGT 33865 | |||| ||||| | || | ||||| ||||||| | ||| |||| | Sbjct 26952 G-CGTTAGTTCTGGTAAATGCGGGCTGCGCCTCAACGCAATCTG-------CCCGAAAGG 26901 Query 33866 GAA-GCCACCGGCACCGCCCGCGTGGATAATGCAACCGGCCCCCGACTGGCAGACACCGC 33924 || ||| |||||||| || |||||||| ||||| || || ||||||| | ||| |||| Sbjct 26900 TAACGCCTCCGGCACCACCGGCGTGGATGATGCAGCCAGCGCCCGACTTACTGACGCCGC 26841 Query 33925 TGAACGGGATTATTTCACCCTCAGAGAG 33952 | |||||||||||||||||||||||||| Sbjct 26840 TCAACGGGATTATTTCACCCTCAGAGAG 26813 Score = 114 bits (126), Expect = 5e-21 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 1224 TTTATCTGGGGAAGGAATTATGCCCCACGTCACTGAAAAAATGCTGGGGCATGAACTTGG 1283 |||| | | |||||| ||| |||||| |||| ||| ||||||||||||||||| ||||| Sbjct 40939 TTTAGCAGAGGAAGGGATTGCGCCCCATGTCATTGAGAAAATGCTGGGGCATGACCTTGG 40880 Query 1284 GGGAGTTATGGCCGTGTATAATAAACACGACTGGTTGTCGGAACAGAAAGATGCGTATGA 1343 ||||| | || || ||||| || ||||| ||||| ||||||| || | ||| ||||| Sbjct 40879 AGGAGTGCTTGCAGTTTATAACAAGCACGATTGGTTAGCGGAACAAAAGGTTGCTTATGA 40820 Query 1344 GTTGTATGCTGATAAAATTTT 1364 | || ||||| || ||||| Sbjct 40819 ACTTTACGCTGACAAGATTTT 40799 >seq4 Length=447486 Score = 102 bits (112), Expect = 3e-17 Identities = 70/79 (89%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 27123 GGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAAT 27182 ||||| ||||||||||||| ||||| ||||||||||||||| ||||||||||||||| Sbjct 299226 GGCCCCTTAGCTCAGTGGTTAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAAC 299285 Query 27183 CCAGCAAGGGCCACCATAT 27201 |||||| ||||||||| || Sbjct 299286 CCAGCAGGGGCCACCAAAT 299304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 203280219719770