Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_028656.1 Length=65955 Score E Sequences producing significant alignments: (Bits) Value seq1 439 1e-118 seq174 154 6e-33 seq4 102 3e-17 >seq1 Length=970878 Score = 439 bits (486), Expect = 1e-118 Identities = 593/818 (72%), Gaps = 6/818 (1%) Strand=Plus/Plus Query 65102 CTCATGTCGTTACGGATCTGTGCATGACTCATTAACGCGAAGATAAAGGTGCCGCCGCAG 65161 ||||||||||| |||||||| || || || || | || || || | ||||||||| Sbjct 75060 CTCATGTCGTTGCGGATCTGCGCGTGGCTGATCAGGGCAAAAATCAGCGTGCCGCCGGTA 75119 Query 65162 ATGTTCCCCGCTAAAGTAGGTAGTGCGAAGGGCCAGATGAAATCGCTCCAG-TGCAGCGT 65220 ||||| || | || || || || || ||||||| ||| || |||| || || | Sbjct 75120 ATGTTGCCGAGCAGTGTCGGCAGGGCAAACGGCCAGAAGAATTCATGCCAGCTGATGC-T 75178 Query 65221 ACCGTTAAACACCAGATAGAGGATTTCAACAGAACCGACAACGATGTGAGTGGTGTCACC 65280 || ||||| ||||||||||| | ||| || || || || ||||| || | || || Sbjct 75179 GCCATTAAAGACCAGATAGAGCACTTCCACCGATCCCACCACGATATGCGCCAGATCGCC 75238 Query 65281 CAGGGCAATAAGCCAGGTCATCAATATAATCACCACAATCTTTGCCGCACCCGCTGCAGG 65340 ||| |||| ||||||||||||| | |||||||| | || || | ||||| | || Sbjct 75239 CAGCGCAACCAGCCAGGTCATCATCACAATCACCAGCAGTTTGGCACCCCCCGCCGAGGG 75298 Query 65341 AAACATCCATACCATAGTGGCGATCAGCCAGCCGGAAATGATCGCGTTGGCAAACATCTC 65400 |||||||| ||||| |||||||| | ||||||||| || | || |||||||||||||| Sbjct 75299 GAACATCCAGACCATGGTGGCGATAATCCAGCCGGAGATCACTGCATTGGCAAACATCTC 75358 Query 65401 GCTGGGGGTGTTCTTCATCACATCCATGCCGATTTTGACAAATGCATCGCGAGTTTCTTC 65460 || ||| || || | |||||| | ||| | ||| ||| ||| || | || || |||| Sbjct 75359 GCCGGGCGTATTTTCCATCACCTTCATACTGATGTTGGTAAACGCCTGACGGGTAGCTTC 75418 Query 65461 ATTGAAGATTGGCATATATTCAAATGCCCACGC-CGCAATACCTGTCCCGAGAATATTAC 65519 | || || ||||| | | ||| ||| ||| | || | || ||||||| | |||| Sbjct 75419 GTCAAATATCGGCATCTCATTAAACGCCAGCGCACCCAGTGCC-GTCCCGATCAGGTTAC 75477 Query 65520 CCAGCAGCACGACGCCCCATAACCGCATAAGTAAGCCAACGTTGCTCATTGTCGGTTTTT 65579 |||||| |||| ||||||||| || | || | | | | || ||| |||||||| | Sbjct 75478 CCAGCAAGACGATGCCCCATAAACGTAATAGCAGGGCGCCATTACTCCAGGTCGGTTTGT 75537 Query 65580 GCATGACGGGTAGTACCGCAGTCACGGTGTTTTCGGTAAATAATTGCTGGCGGGCCATAA 65639 |||| || || || || || || ||||| ||||||||||| | ||||| || ||||| | Sbjct 75538 GCATCACCGGCAGGACTGCCGTGACGGTATTTTCGGTAAACAGCTGCTGACGCGCCATGA 75597 Query 65640 TGACGATAATAAAACCAAAGGTATAACCGAGATTCTCCAGCAAGAAGCTGCCC-GGCACA 65698 ||||||||| |||||||||||||||||| || || || ||| |||| | ||| || || Sbjct 75598 TGACGATAACAAAACCAAAGGTATAACCCAGGTTTTCAAGC-AGAAACGCCCCTGGTACG 75656 Query 65699 CCTTCCAGTTCGACATGAAATATCCCTTTTGCCAGTAATGAAGCGCCCATCGACAGACCC 65758 || ||||| | || ||||||||||| || |||| | || |||||||| || | ||| Sbjct 75657 CCATCCAGATGCACCTGAAATATCCCCTTCGCCATCAGCGAGGCGCCCATGGATAAGCCC 75716 Query 65759 GCCGCAATGGCTGACCACAGTAGTGCCATTGCGTCGCGTTCCAGCTCTTTTTCACCATCC 65818 ||||||||||||||||| || || ||||| | ||||| |||||||| || || |||||| Sbjct 75717 GCCGCAATGGCTGACCAGAGCAGCGCCATACCATCGCGCTCCAGCTCCTTCTCCCCATCC 75776 Query 65819 TGGCGGATATGCTCATGAATTGCCATCGCCCGGGAGGGGAGTCGATCTTCATCTATTTCT 65878 |||||||| | ||||| || || || |||||||| | || ||||| | ||| Sbjct 75777 TGGCGGATCTCTTCATGGATGGCGGCGGCGCGGGAGGGTAAAGCCTCCTCATCGACTTCG 75836 Query 65879 AtttttttGCCACGCTCTTTTTCTTCGCTCTCAACTTC 65916 || | |||| || || ||||| ||||| || || Sbjct 75837 ATGTCAGTGCCCTTATCCTTCTCTTCACTCTCGACGTC 75874 Score = 132 bits (146), Expect = 2e-26 Identities = 75/76 (99%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 1320 TGGTGTCCCCTGCAGGAATCGAACCTGCAATTAGCCCTTAGGAGGGGCTCGTTATATCCA 1379 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 74596 TGGTGTCCCCTGCAGGAATCGAACCTGCAACTAGCCCTTAGGAGGGGCTCGTTATATCCA 74655 Query 1380 TTTAACTAAGAGGACA 1395 |||||||||||||||| Sbjct 74656 TTTAACTAAGAGGACA 74671 >seq174 Length=42168 Score = 154 bits (170), Expect = 6e-33 Identities = 233/328 (71%), Gaps = 10/328 (3%) Strand=Plus/Minus Query 35006 ATTACCGCGATAACGCCATAACCTACAAAGAGCAGCGCGATAAAAAAGTCAGTGAGCTGG 35065 ||||||| | || ||||| |||||| | |||||| || | | ||| || Sbjct 27132 ATTACCGAGGCAATGCCATTGACTACAAGGCGCAGCGTGACACGGCAAGCAGCAGCCTAA 27073 Query 35066 AGCTGGCAAATGCAACCATTACTGATATGCAGCAGCGCCAGCGTGATGTTGCTGCACTTG 35125 ||||||| |||| ||||| ||| |||||||| | | ||||||||||| | || |||| Sbjct 27072 AGCTGGCTAATGACACCATCACTTATATGCAGACGAGACAGCGTGATGTGGACGCGCTTG 27013 Query 35126 ATGCCAGATACTCGAGGGAATTAGCCGATGCGAGAGCTGAAAATGAAACTCTTC-GCGCT 35184 |||| | |||| | | ||| | || ||||| | |||| | ||| |||||| || | Sbjct 27012 ATGCGAAATACACCAAGGAGCTGGCAGATGCCAAAGCTAAGCTTGATTCTCTTCAGCAGT 26953 Query 35185 GACGTTGCCGCTGGTTACCGCAGCCTGCGGATCAACGCCACCTGTCCAGGTCCCGTGCGT 35244 | |||| ||||| | || | ||||| ||||||| | ||| |||| | Sbjct 26952 G-CGTTAGTTCTGGTAAATGCGGGCTGCGCCTCAACGCAATCTG-------CCCGAAAGG 26901 Query 35245 GAA-GCCACCGGCACCGCCCGCGTGGATAATGCAACCGGCCCCCGACTGGCAGACACCGC 35303 || ||| |||||||| || |||||||| ||||| || || ||||||| | ||| |||| Sbjct 26900 TAACGCCTCCGGCACCACCGGCGTGGATGATGCAGCCAGCGCCCGACTTACTGACGCCGC 26841 Query 35304 TGAACGGGATTATTTCACCCTCAGAGAG 35331 | |||||||||||||||||||||||||| Sbjct 26840 TCAACGGGATTATTTCACCCTCAGAGAG 26813 Score = 114 bits (126), Expect = 5e-21 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 2594 TTTATCTGGGGAAGGAATTATGCCCCACGTCACTGAAAAAATGCTGGGGCATGAACTTGG 2653 |||| | | |||||| ||| |||||| |||| ||| ||||||||||||||||| ||||| Sbjct 40939 TTTAGCAGAGGAAGGGATTGCGCCCCATGTCATTGAGAAAATGCTGGGGCATGACCTTGG 40880 Query 2654 GGGAGTTATGGCCGTGTATAATAAACACGACTGGTTGTCGGAACAGAAAGATGCGTATGA 2713 ||||| | || || ||||| || ||||| ||||| ||||||| || | ||| ||||| Sbjct 40879 AGGAGTGCTTGCAGTTTATAACAAGCACGATTGGTTAGCGGAACAAAAGGTTGCTTATGA 40820 Query 2714 GTTGTATGCTGATAAAATTTT 2734 | || ||||| || ||||| Sbjct 40819 ACTTTACGCTGACAAGATTTT 40799 >seq4 Length=447486 Score = 102 bits (112), Expect = 3e-17 Identities = 70/79 (89%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 27183 GGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAAT 27242 ||||| ||||||||||||| ||||| ||||||||||||||| ||||||||||||||| Sbjct 299226 GGCCCCTTAGCTCAGTGGTTAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAAC 299285 Query 27243 CCAGCAAGGGCCACCATAT 27261 |||||| ||||||||| || Sbjct 299286 CCAGCAGGGGCCACCAAAT 299304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 210914827058844