Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_028672.1 Length=149732 Score E Sequences producing significant alignments: (Bits) Value seq1 246 3e-60 >seq1 Length=970878 Score = 246 bits (272), Expect = 3e-60 Identities = 312/426 (73%), Gaps = 6/426 (1%) Strand=Plus/Plus Query 24285 GATGTCGTCAAAGACGATCGACGGATCTGCCAGGATGTTACGGATGATATGGGTGTATGA 24344 ||| |||||||| || | || |||||| | |||||||||||||| |||||||| || Sbjct 156511 GATATCGTCAAAAACTACCGCCGGATCGTTAACAATGTTACGGATGATGTGGGTGTAAGA 156570 Query 24345 GCGAGAGTGGATAGTCTCACTGAACGCCCAAGTCTCTACCCATGTTTCCAGGGTTGTG-- 24402 || ||||| || ||||| ||||||||| || || | ||| |||||||| || | Sbjct 156571 ACGGGAGTGAATCGTCTCTGAGAACGCCCAGGTTTCAATCCAGGTTTCCAG--TTCAGGA 156628 Query 24403 -TCGGACACGATCGGGAGCAGAACTGCGTTCGGCCCACGGCCCTGTACAGAATCCAGAAG 24461 ||| | | | ||| ||||| | ||||||| | |||||||| | |||||||| || Sbjct 156629 ATCG-AGATCAGCGGCAGCAGCGCGACGTTCGGGCTGCGGCCCTGAATCGAATCCAGCAG 156687 Query 24462 GATCTGGTACTTCAGGTTGCTGATGAAGATGTGCTTCTCGTGATCCGGCAGATTCATGTA 24521 |||| ||||||||||||||||| ||||| || || || ||||||||||| | ||| Sbjct 156688 CGTCTGATACTTCAGGTTGCTGATAAAGATATGTTTTTCATGATCCGGCAGCGCCTGGTA 156747 Query 24522 GTCGATACGGTCACGGGTCACGTTAACTTCTTCCGGACGCCAGAAGAACGCCAGTTGCTT 24581 ||||| || || || | |||| || |||||||||||||||||||| | || ||||| Sbjct 156748 ATCGATGCGATCGCGTGAAACGTCGACCTCTTCCGGACGCCAGAAGAAGGAGAGCTGCTT 156807 Query 24582 CTCGATCAGCTTCTCGAACTTGGCGTGTTTCTGCTGGTCATAGCGAGAAACGTTCGGTGT 24641 ||||||||||| || || || | | ||| |||||||| |||| | ||||| | Sbjct 156808 TTCGATCAGCTTTTCAAAGATGTCATATTTTTGCTGGTCGAAGCGCGCCACGTTTACGGA 156867 Query 24642 CTCGCCGAGGAACATCGGCTGAGTCAGGAAATCGAATTTGTTCTGGTTGAAAGTGCTGTA 24701 || |||| |||||||||| |||| ||| ||||||||| ||||||| ||| Sbjct 156868 CTGACCGAAAAACATCGGCTCTTTCAGCTGATCATTTTTGTTCTGTGAGAAAGTGGAGTA 156927 Query 24702 AGACAT 24707 || ||| Sbjct 156928 AGCCAT 156933 Score = 187 bits (206), Expect = 2e-42 Identities = 478/711 (67%), Gaps = 35/711 (5%) Strand=Plus/Plus Query 25324 CGAGGTGGCTCAAAACCGTTCGTGGAGTTGGTAATCTGACTGGACGTCTCGCAAGGCATC 25383 || || ||||||| |||||| |||| |||| ||||| || || || | |||||| Sbjct 157376 CGCGGAGGCTCAATACCGTTGGTGGCATTGGAGATCTGCGACGAGGTTTCAGACGGCATC 157435 Query 25384 ATCGTGGACAGCGTAGAGTTACGCAGTCCATGAATAGCGATGTCGATACGCAGCTTTTCC 25443 | || ||||| || ||||| ||||| || || | || || |||||| ||||| Sbjct 157436 AGCGCAGACAGGGTCGAGTTGCGCAGGCCGTGCGTTTTAATCTCTTCACGCAGGCTTTCC 157495 Query 25444 CAATCCATCTTCAGT--TTCGCAGTGTGGAGGCCATCTACCTCTTTCTTGTAACGGTCGA 25501 || || | | ||| |||| || || | || | ||||||||||| ||||| Sbjct 157496 CAGTCGAGATGCAGCGGTTCGT--TGCTGATCGCGTCCAGATCTTTCTTGTAGGTGTCGA 157553 Query 25502 TCGGCAGAATGCCCTGAGAGTATGTGGTCTCGTGGAAGAGATCACATTTGCCCAGTTCTT 25561 | |||||||||||||| | || ||||| || | ||| || || | |||| Sbjct 157554 TAGGCAGAATGCCCTGCGCATAGGTGGTTTCATTGAACCACGGGCAGGCACCTTGCTCTT 157613 Query 25562 TTGCCAGGTCAACCGACGCTTCCAGCAGGTAATACTGGAATGCTTCAGCCAGTTCGTGAA 25621 | ||||| ||| || |||| ||||||||||||||| | |||||| || || || Sbjct 157614 TCGCCAGCTCATTTGAGGCTTTCAGCAGGTAATACTGAATCGCTTCAA--AGGTCTTGTG 157671 Query 25622 C---AG--CATTTGC--TGCACGAGGATCGCTGTACTTCAGGCCACGCTTCGCCAGGTAA 25674 | || |||| || ||| |||| ||| || ||| |||||||||| || Sbjct 157672 CGTCAGGCCATTGGCGCTGCC-----ATCGGAGTAGCGCACACCATGCTTCGCCAGATAG 157726 Query 25675 TATGCTAAGTTGGTCCAGCCAATACCCAGAGTACGTCGCAGTTTAGT-CTTCTCTG--CC 25731 || || ||||| | ||| |||||||||||||| || | | | | ||| | Sbjct 157727 TAGGCGTAGTTGATGACGCCGATACCCAGAGTACGACGACCCATCGCGCCACGCTGGGCA 157786 Query 25732 GCCAGAACCGGATAGTTCTGATAATCTAACAGACGATCCAATGCACGAAC---CAGTGTA 25788 ||| | | ||| |||| |||||| || | ||| ||| | ||||| || ||| ||| Sbjct 157787 GCCGGGATCGGGTAGTCCTGATAGTCGAGCAGCGCATCAAGCGCACGTACGGCCAGGGTA 157846 Query 25789 CGGACAGGCTCACGCATGTCTTCCAGCTTCTCCACCTTGCCGAGGTTGATGGCAGACAGA 25848 | ||| ||| || || || || | || | ||||||||||| ||||| || Sbjct 157847 --GCCAG-CTCTTCCAGATCGTCGAGGCTTTCGATGGCGCCGAGGTTGAACGCAGAGAGC 157903 Query 25849 GTACACAGGGCCACTTCCCCCGGGTCGTTCGGATCATTAATGTCCGTAATCGGATGTGTC 25908 ||||||||||| | || || || |||| || |||| || | ||| | ||| Sbjct 157904 GTACACAGGGCAATCTCACC---GTT-TTCG--TCGTTAACATCTTCCAGCGGTTTCGTC 157957 Query 25909 GGCAGGGCGATTTCCATGCACAGGTTGGACTGTTTCACCGGGGC-CTGTTCGGGGTCGAA 25967 |||||||||||||||| ||| ||||| ||||| ||||| || || || ||||| || Sbjct 157958 GGCAGGGCGATTTCCAGGCAGAGGTTAGACTGGCGAACCGGCGCAATGCTC-GGGTCAAA 158016 Query 25968 CGGGCTATTAGTGTTGCAGTGGTCAACGTGCTGCACGTAAATACGGCCTGT 26018 |||||| | ||||||||||| || |||| ||| | ||| |||||||| || Sbjct 158017 CGGGCTGTGGGTGTTGCAGTGATCGACGTTCTGAATGTAGATACGGCCGGT 158067 Score = 158 bits (174), Expect = 1e-33 Identities = 276/392 (70%), Gaps = 10/392 (3%) Strand=Plus/Plus Query 23776 AGGCCAACCGCTCGCATACGCTGGTCGGTGATGTAGTCGATGTAACCGTCCAGCATACCT 23835 ||||| || || ||||||| | ||||||||| || ||||| | || ||| || Sbjct 155969 AGGCCGACAGCCTGCATACGGATATTGGTGATGTACTCAATGTACTGGCAGAGAATATCT 156028 Query 23836 TTGTTCAGGCCGATCATCGAACCGTCTTTGAACAGGAAG-CTGCCCCAGTCTTTCTCCTG 23894 ||||||||||||||||| || ||| | ||||||| | |||||| | ||||||||||| Sbjct 156029 TTGTTCAGGCCGATCATTGAGCCGCCGCTGAACAGATATTCTGCCC-ACTCTTTCTCCTG 156087 Query 23895 CACCGATGCGTCGATAAAGCCCTGTCGT-GC-CTCTTCGTAGCAATCTTCTGCCA-CACG 23951 || | ||| | |||| || || || |||||| ||| ||| | || | | | Sbjct 156088 CAGTGCTGCTTTCTTAAACAGCT--CGAAGCACTCTTCACGGCACTCTGCCGCAATCTCT 156145 Query 23952 TGCAAA-CAGGTCACCTTCGTTACCGTTCTGCATTTCTTTCAGCATATACTGAGTTCCGG 24010 | || | || | | || | |||| | ||| |||||||| | ||| || |||| Sbjct 156146 TTCATCTCCGG--ATCGTCTTCACCGCTGCGCAGCAGGTTCAGCATGTGCTGGGTGCCGG 156203 Query 24011 ACAAATGCAAGGCTTCATCACGAGCAATCAGTTCAATAATGTTGGTGTTACCCAGCATTA 24070 || |||| |||||||| || |||||||| | || || |||| || || ||| | Sbjct 156204 TCAGGTGCAGCGCTTCATCGCGGGCAATCAGCTTGATGATTTTGGCATTGCCTTCCATCA 156263 Query 24071 CGCCGCGCTCACCGAAAGCGAAGGAGCAGGCGAAGCTCACGTAGAAACGGATCGCTTCCA 24130 | |||||| |||| |||||||| ||||||||||| || ||||||||||||||||||| Sbjct 156264 GCTCACGCTCAGCGAACGCGAAGGAACAGGCGAAGCTGACATAGAAACGGATCGCTTCCA 156323 Query 24131 GTGCATTGATGTTGTGCAGACACAGATACAGC 24162 | ||||||| | | ||| || | ||| ||| Sbjct 156324 GCGCATTGACGCTCATCAGGCAGATATAGAGC 156355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478976264466080