Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_028686.1 Length=166313 Score E Sequences producing significant alignments: (Bits) Value seq1 188 8e-43 seq2 158 1e-33 seq13 145 8e-30 >seq1 Length=970878 Score = 188 bits (208), Expect = 8e-43 Identities = 312/448 (70%), Gaps = 2/448 (0%) Strand=Plus/Plus Query 128633 CATCAGGTTATTAATCTGAACACCATAATCTAAATGACGAATACGGTTTTCATCTACACC 128692 |||||| || || | ||| |||||||| || | ||||| | ||||| | || ||||| Sbjct 158263 CATCAGCTTGTTGAGCTGTACACCATAGTCCATGTGACGCACGCGGTTGCCTTCAACACC 158322 Query 128693 TTTGTTGTTCTTAAGTACGAGGAGGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACAG 128752 ||||||||| || || || ||| |||| | ||||| ||||| || || ||| |||| Sbjct 158323 ACGGTTGTTCTTCAGCACCAGCAGGCTTTCGATTTCCAGATGCCACATCGGGTAGAACAG 158382 Query 128753 TGTCGCCGCGCCACCACGGACTCCGCCTTGGGAGCAGGATTTAACTGCTGTTTGGAAGTG 128812 || || ||||| ||||| || ||||| || || ||||| || || || || ||||| || Sbjct 158383 CGTGGCTGCGCCGCCACGAACGCCGCCCTGAGAACAGGACTTCACCGCGGTCTGGAAATG 158442 Query 128813 CTTCCAGAAAGGAATAACTCCAGTATGTTTGACTTCACCGAATCCAATTTTTGAACCTTC 128872 ||| |||| || ||| || ||||| |||||||| | ||| || Sbjct 158443 CTTGTAGAACGGGATACAGCCGGTATGGAACGCTTCACCGCCGCGAATCGGGCTGCCCAG 158502 Query 128873 TGCACGAATCATACCTGCATTAATACCAATACCTGCACGCTTACTGATGTATTTTGTAAT 128932 ||||| || ||| || || ||||| || || ||||||| | || ||||| ||| Sbjct 158503 CGCACGGATACGACCGGCGTTGATACCGATGCCGGCACGCTGAGAGACATATTTCACAAT 158562 Query 128933 TGACGCAGCAGCTT-CGTTAATTGAATTAAGACTATCACCGCCTTCAATAACCACGCATG 128991 || ||| | || | |||| || || | || || || |||| || || | ||| || | Sbjct 158563 TG-CGCTGGAGGTGGCGTTGATGGAGTCCAGGCTGTCGCCGCACTCGATCAGCACACAGG 158621 Query 128992 AACTAAACTGACGTGTCGGAGTACGAACACCAGACATAATTGGAGTTGGCAATGAAATCT 129051 | || ||||||||||| || || || || |||||||| ||||| || |||| || || | Sbjct 158622 AGCTGAACTGACGTGTTGGGGTGCGTACGCCAGACATGATTGGCGTCGGCAGGGAGATTT 158681 Query 129052 TTTTAGTAGAAACTGCATCATAGAAACG 129079 | || || | |||||||||||||| Sbjct 158682 TAAACGTCGAGATCGCATCATAGAAACG 158709 >seq2 Length=722220 Score = 158 bits (174), Expect = 1e-33 Identities = 147/187 (79%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 48802 ATTATAGTGCCTCTGTGAAAGTACGAGCGATAACGTCGCGCTGCTGTTCCGACGTCAGGG 48861 |||| |||| || ||||| || || | || || || ||||||| || ||||| | Sbjct 515045 ATTACAGTGACTTAGTGAAGGTTCGGGTAATCACATCCTGCTGCTGCTCTTTAGTCAGTG 515104 Query 48862 AGTTGAAGCGTACCGCGTAGCCGGAAACACGAATGGTCAGCTGCGGATATTTTTCCGGAT 48921 |||| ||||| || ||||| |||||||| ||||||||||| ||||||||||| || |||| Sbjct 515105 AGTTAAAGCGCACAGCGTAACCGGAAACGCGAATGGTCAGTTGCGGATATTTCTCTGGAT 515164 Query 48922 GCTCAACCGCGTCCAGCAGAGTTTCACGACGCAGCACGTTAACGTTCAGGTGCTGACCGC 48981 | || | ||| |||||||| ||||||| || ||||||||||| ||||||||||||| Sbjct 515165 GTTCCATCGCATCCAGCAGCATTTCACGGTTCATAACGTTAACGTTGAGGTGCTGACCGC 515224 Query 48982 CTTCAAT 48988 |||| || Sbjct 515225 CTTCGAT 515231 >seq13 Length=199142 Score = 145 bits (160), Expect = 8e-30 Identities = 137/175 (78%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 48813 TCTGTGAAAGTACGAGCGATAACGTCGCGCTGCTGTTCCGACGTCAGGGAGTTGAAGCGT 48872 || || || ||||| | || |||||||||||||| || | ||| || ||||| || || Sbjct 145334 TCAGTAAAGGTACGGGTAATCACGTCGCGCTGCTGCTCAGGCGTGAGTGAGTTAAAACGC 145393 Query 48873 ACCGCGTAGCCGGAAACACGAATGGTCAGCTGCGGATATTTTTCCGGATGCTCAACCGCG 48932 || || ||||| ||||| || || |||||||||||||| ||||| ||||| | ||| || Sbjct 145394 ACGGCATAGCCTGAAACGCGGATAGTCAGCTGCGGATAGTTTTCAGGATGTTTAACTGCA 145453 Query 48933 TCCAGCAGAGTTTCACGACGCAGCACGTTAACGTTCAGGTGCTGACCGCCTTCAA 48987 || ||| ||||| || ||||| ||||| |||||||| ||||| || ||||||| Sbjct 145454 TCTTCCAGCGTTTCGCGGCGCAGAACGTTGACGTTCAGATGCTGTCCACCTTCAA 145508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 532031240290520