Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_028762.1 Length=161989 Score E Sequences producing significant alignments: (Bits) Value seq2 109 6e-19 seq13 91.5 2e-13 >seq2 Length=722220 Score = 109 bits (120), Expect = 6e-19 Identities = 74/83 (89%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 64856 AAAATGGTACACACTACAGGATTCGAACCTGTGACCTAGGGCTTAGAAGGTCCTTGCTCT 64915 || ||||||| | ||||||||||||||||||||||||| ||||||||||| | |||||| Sbjct 220892 AATATGGTACGCCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGGTGCTCT 220833 Query 64916 ATCCAACTGAGCTAAGTGTGCAT 64938 |||||||||||||||| | |||| Sbjct 220832 ATCCAACTGAGCTAAGGGCGCAT 220810 Score = 104 bits (114), Expect = 2e-17 Identities = 129/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 55540 AGTAAATGTTCTGTTAATAACATCTTCTTTCTGTTCTGCAGTCAGAGAATTAAATCTGAC 55599 ||| || |||| | |||| ||||| | | ||| ||| |||||| || ||||| | || Sbjct 515058 AGTGAAGGTTCGGGTAATCACATCCTGCTGCTGCTCTTTAGTCAGTGAGTTAAAGCGCAC 515117 Query 55600 GGCATACCCAGAAACGCGAATTGTTAATTGTGGATATTTTTCAGGATGTTCTTTAGCATC 55659 || || || ||||||||||| || | ||| |||||||| || |||||||| | ||||| Sbjct 515118 AGCGTAACCGGAAACGCGAATGGTCAGTTGCGGATATTTCTCTGGATGTTCCATCGCATC 515177 Query 55660 TAACAACATTTCTTTATTAAGAACATTGACATTCAGATGTTGTCCACCTTCGATTCT 55716 | || |||||| || | ||| || || || || || || || |||||||| || Sbjct 515178 CAGCAGCATTTCACGGTTCATAACGTTAACGTTGAGGTGCTGACCGCCTTCGATGCT 515234 >seq13 Length=199142 Score = 91.5 bits (100), Expect = 2e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 55538 TCAGTAAATGTTCTGTTAATAACATCTTCTTTCTGTTCTGCAGTCAGAGAATTAAATCTG 55597 |||||||| || | | |||| || || | ||| || | || || || ||||| | Sbjct 145334 TCAGTAAAGGTACGGGTAATCACGTCGCGCTGCTGCTCAGGCGTGAGTGAGTTAAAACGC 145393 Query 55598 ACGGCATACCCAGAAACGCGAATTGTTAATTGTGGATATTTTTCAGGATGTTCTTTAGCA 55657 |||||||| || |||||||| || || | || ||||| ||||||||||||| ||| Sbjct 145394 ACGGCATAGCCTGAAACGCGGATAGTCAGCTGCGGATAGTTTTCAGGATGTTTAACTGCA 145453 Query 55658 TCTAACAACATTTCTTTATTAAGAACATTGACATTCAGATGTTGTCCACCTTC 55710 ||| || | |||| ||||| ||||| |||||||| ||||||||||| Sbjct 145454 TCTTCCAGCGTTTCGCGGCGCAGAACGTTGACGTTCAGATGCTGTCCACCTTC 145506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 518195541872760