Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_028773.1 Length=182145 Score E Sequences producing significant alignments: (Bits) Value seq1 210 3e-49 seq13 138 1e-27 seq2 127 2e-24 >seq1 Length=970878 Score = 210 bits (232), Expect = 3e-49 Identities = 293/411 (71%), Gaps = 0/411 (0%) Strand=Plus/Minus Query 18308 TGCCAACCCCAATTATGGCAGGCGTTCGCACCCCAACCCGCCAGTTCTCAAGCTGTGTTA 18367 |||| || ||||| ||| | ||||| ||||||||||| || |||||| |||||| Sbjct 158672 TGCCGACGCCAATCATGTCTGGCGTACGCACCCCAACACGTCAGTTCAGCTCCTGTGTGC 158613 Query 18368 AGATTGAAGTCGGTGACAGCCTCGAATCAATTAACGAATCAGCCGCCGCAGTCGTAAATT 18427 ||| || ||| |||||||| || || || |||| | || |||| | || || | Sbjct 158612 TGATCGAGTGCGGCGACAGCCTGGACTCCATCAACGCCACCTCCAGCGCAATTGTGAAAT 158553 Query 18428 ATATTAGTAAACGCGCTGGTATCGGTATTAACGCTGGTCGAATTCGTGCGGAAGGAAGTC 18487 || | | | || || || |||||||| ||||| ||||| || |||||| || || | Sbjct 158552 ATGTCTCTCAGCGTGCCGGCATCGGTATCAACGCCGGTCGTATCCGTGCGCTGGGCAGCC 158493 Query 18488 AAGTTCGCTCTGGTGAAGTCAAACACACTGGTGTTATTCCATTCTGGAAACATTTCCAGA 18547 ||||| ||||||| || || || ||| || |||| || |||||||||| Sbjct 158492 CGATTCGCGGCGGTGAAGCGTTCCATACCGGCTGTATCCCGTTCTACAAGCATTTCCAGA 158433 Query 18548 CTGCTGTTAAATCGTGTTCACAAGGCGGTGTTCGTGGTGGTGCGGCAACTCTGTATTATC 18607 | || || || || ||||| || ||||| |||||||| || || || || |||| || | Sbjct 158432 CCGCGGTGAAGTCCTGTTCTCAGGGCGGCGTTCGTGGCGGCGCAGCCACGCTGTTCTACC 158373 Query 18608 CTATGTGGCATCTTGAATTCGAAAAGCTGATTGTTCTGAAAAATAACAAAGGTGTTGATG 18667 | ||||||||||| ||| |||||| ||| | || ||||| || ||| |||||||| | Sbjct 158372 CGATGTGGCATCTGGAAATCGAAAGCCTGCTGGTGCTGAAGAACAACCGTGGTGTTGAAG 158313 Query 18668 AAAACCGCATTCGTCAGCTTGATTATGGTCTACAAATCAATAAACTGATGT 18718 |||||| | ||||| | || |||||| |||| |||| || ||||||| Sbjct 158312 GCAACCGCGTGCGTCACATGGACTATGGTGTACAGCTCAACAAGCTGATGT 158262 Score = 152 bits (168), Expect = 6e-32 Identities = 485/741 (65%), Gaps = 32/741 (4%) Strand=Plus/Minus Query 20082 CAGAAACATGAAATGTTCGAAAACTTAATTGAAAAGCAGTTGAGTTTCTTCTGGCGTCCT 20141 || ||| |||| || || ||||| | || ||||||||| | |||||||||||||| Sbjct 156840 CAAAAATATGACATCTTTGAAAAGCTGATCGAAAAGCAGCTCTCCTTCTTCTGGCGTCCG 156781 Query 20142 GAAGAGGTTGACGTAACTCGTGATAAGATCGATTATGATAATTTACCAGAACATGAAAAA 20201 |||||||| ||||| | || ||| |||||||| | | || || ||||||||| Sbjct 156780 GAAGAGGTCGACGTTTCACGCGATCGCATCGATTACCAGGCGCTGCCGGATCATGAAAAA 156721 Query 20202 CATATCTTTACTTCCAATTTGAAGTATCAGAGCTTACTCGATACCGTTCAGGGACGTGCT 20261 |||||||||| ||| |||||||||||| | || ||| | ||||||| || Sbjct 156720 CATATCTTTATCAGCAACCTGAAGTATCAGACGCTGCTGGATTCGATTCAGGGCCGCAGC 156661 Query 20262 CCTAACACTGCTTTTATGTCCATCGTATCTGAT--GTAACACTTGACACATGGATTCCTA 20319 || ||| || | || | | | || ||| | | ||| || || |||||| | Sbjct 156660 CCGAACGTCGCGCTGCTGCCGCTGATCTC-GATTCCTGA-ACTGGAAACCTGGATTGAAA 156603 Query 20320 CCTGGGCGTTCTCGGAGACAATCCACAGTCGTTCTTATACACACATTATGCGCAACGTGT 20379 ||||||||||||| ||||| || ||| |||||||| || ||||| || || ||| | Sbjct 156602 CCTGGGCGTTCTCAGAGACGATTCACTCCCGTTCTTACACCCACATCATCCGTAACATTG 156543 Query 20380 ACGAAGATCCGTCCAAGATCTTTGACGAAATCGTTCTTGATTCTGCA-ATCATGAAGCGT 20438 | |||||| | | |||||||| |||||| | | ||| || || |||| Sbjct 156542 TTAACGATCCGGCGGTAGTTTTTGACGATATCGTT-ACCAATGAGCAGATTCTGGCGCGT 156484 Query 20439 GCTGATGCTGTTACCCGCTATTACGACCAACTGATTAACGCGACCACTGATTATCATCAT 20498 ||| | | | | | |||||||||||| | |||||| | ||||| | | ||||| Sbjct 156483 GCTCAGGATATCTCACGCTATTACGACGATCTGATTGAGATGACCAACTACTGGCATCAG 156424 Query 20499 TTCTGTAATAACTTTACAGCAGAGACGGAAGTTAATGAAAATTATAAACGTTTGATGT-- 20556 | || | | || ||| | || || | | || || ||| || Sbjct 156423 CTGGGTGAAGGC---AC-GCA-----TCAGGTCAACGGCA-----AACCGGTTGTCGTCA 156378 Query 20557 ---TGCGAGATATTAAAAAGAAACTGTATCTGTGTATGCACGCCGTTAACGCACTGGAAG 20613 |||| | | || ||| | || ||| | || || ||| || || ||||||| Sbjct 156377 GCCTGCGCGCCCTGAAGAAGCAGCTCTATATCTGCCTGATGAGCGTCAATGCGCTGGAAG 156318 Query 20614 CAATTCGTTTCTATGTTTCGTTTGCTTGCACCTTTGCATTTGCAGAAGATAAGAAAATGG 20673 | || ||||||||||| || || || |||| || || || || | || |||| Sbjct 156317 CGATCCGTTTCTATGTCAGCTTCGCCTGTTCCTTCGCGTTCGCTGAGCGTGAGCTGATGG 156258 Query 20674 AAGGCAGTGCTAAAATTATGCGTCTGATTGCGCGTGATGAACAACTGCACTTGAAAGGCA 20733 |||||| ||| ||||| || |||||||| || |||||| |||||| ||| |||| Sbjct 156257 AAGGCAATGCCAAAATCATCAAGCTGATTGCCCGCGATGAAGCGCTGCACCTGACCGGCA 156198 Query 20734 CACAATATATGCTG--CGTATTTGGCAGCAAGGTAAAGATGATCCTGAAATGATCGAAAT 20791 | || | |||||| | | | ||||| ||| |||| ||||| || |||| || || Sbjct 156197 CCCAGCACATGCTGAACCTGCTGCGCAGC--GGTGAAGACGATCCGGAGATGAAAGAGAT 156140 Query 20792 TGCCAAAGAGT---GTGAAGA 20809 ||| ||||| ||||||| Sbjct 156139 TGCGGCAGAGTGCCGTGAAGA 156119 >seq13 Length=199142 Score = 138 bits (152), Expect = 1e-27 Identities = 136/176 (77%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 125484 TTGAAGGCGGTCAGCATCTTAATGTCAATGTTCTGAATCGTGAAACGCTTCAAGATGCAG 125543 ||||||| || |||||||| || ||||| |||||| || |||||||| ||||||||| Sbjct 145508 TTGAAGGTGGACAGCATCTGAACGTCAACGTTCTGCGCCGCGAAACGCTGGAAGATGCAG 145449 Query 125544 TAAAACATCCTGAAAAATATCCTCAACTGACCATTCGTGTTTCTGGTTATGCAGTTCGTT 125603 | |||||||||||||| ||||| || ||||| || || ||||| || ||||| || |||| Sbjct 145448 TTAAACATCCTGAAAACTATCCGCAGCTGACTATCCGCGTTTCAGGCTATGCCGTGCGTT 145389 Query 125604 TTAATGCATTGACTCGCGAACAGCAGTTGGACGTTATCAATCGCACGTTTACGGAA 125659 |||| || | || | || |||||| ||||| || | || || ||||| ||| Sbjct 145388 TTAACTCACTCACGCCTGAGCAGCAGCGCGACGTGATTACCCGTACCTTTACTGAA 145333 >seq2 Length=722220 Score = 127 bits (140), Expect = 2e-24 Identities = 124/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 125481 GCATTGAAGGCGGTCAGCATCTTAATGTCAATGTTCTGAATCGTGAAACGCTTCAAGATG 125540 |||| |||||||||||||| || || || || ||| |||| ||||||| ||| | |||| Sbjct 515233 GCATCGAAGGCGGTCAGCACCTCAACGTTAACGTTATGAACCGTGAAATGCTGCTGGATG 515174 Query 125541 CAGTAAAACATCCTGAAAAATATCCTCAACTGACCATTCGTGTTTCTGGTTATGCAGTTC 125600 | | ||||||| || |||||||| |||||||||||||| ||||| ||||| || || | Sbjct 515173 CGATGGAACATCCAGAGAAATATCCGCAACTGACCATTCGCGTTTCCGGTTACGCTGTGC 515114 Query 125601 GTTTTAATGCATTGACTCGCGAACAGCAGTTGGACGTTAT 125640 | ||||| || ||||| || |||||| ||| || || Sbjct 515113 GCTTTAACTCACTGACTAAAGAGCAGCAGCAGGATGTGAT 515074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582689606930200