Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_028820.1 Length=162101 Score E Sequences producing significant alignments: (Bits) Value seq1 176 5e-39 seq4 102 8e-17 >seq1 Length=970878 Score = 176 bits (194), Expect = 5e-39 Identities = 344/499 (69%), Gaps = 16/499 (3%) Strand=Plus/Plus Query 140122 GGGCTGAACAACGTGATGTAATCGTTTTTAATCAGACGTTCAATCATGAGGTCGTTAATT 140181 |||||||||| ||||| | ||| ||| | ||| || | | ||| || | ||| | Sbjct 158219 GGGCTGAACAGGGTGATATCTTCGCCTTTCAGCAGGCGCTGATACATCAGCTTGTTGAGC 158278 Query 140182 TGAACACCATAATCTAGGTGGCGAATACGGTTTTCATCAACACCTTTATTGTTCTTCAGT 140241 || |||||||| || | ||| || | ||||| | |||||||| ||||||||||| Sbjct 158279 TGTACACCATAGTCCATGTGACGCACGCGGTTGCCTTCAACACCACGGTTGTTCTTCAGC 158338 Query 140242 ACGAGCAGGTTTTCTACTTCAAGATGCCAAATCGGATAGTACAAAGTAGCTGCGCCACCG 140301 || |||||| |||| | ||| |||||||| ||||| ||| ||| || |||||||| || Sbjct 158339 ACCAGCAGGCTTTCGATTTCCAGATGCCACATCGGGTAGAACAGCGTGGCTGCGCCGCCA 158398 Query 140302 CGAATGCCGCCTTGAGAACAAGATTTAACAGAAG-CT--AAGTGAGTTTTCCAGAATGGA 140358 |||| |||||| |||||||| || || || | | || || || || |||| || Sbjct 158399 CGAACGCCGCCCTGAGAACAGGACTTCACCGCGGTCTGGAAATG---CTTGTAGAACGGG 158455 Query 140359 ATAACGCCTGTATG--ACGAACTTCACCAGCGCCAATCTTAGAACCTTCAGCAC-GATAC 140415 ||| ||| ||||| ||| ||||||| ||| |||| || |||| ||||| Sbjct 158456 ATACAGCCGGTATGGAACG--CTTCACCGCCGCGAATCGGGCTGCCCAGCGCACGGATAC 158513 Query 140416 ATTCCAGCGTTAACACCAATACCGGCACGTTTGCTGATATATTTGATGATTGCTTTGTTT 140475 || ||||| | ||| || |||||||| | || |||||| | ||||| || Sbjct 158514 -GACCGGCGTTGATACCGATGCCGGCACGCTGAGAGACATATTTCACAATTGCGCTGGAG 158572 Query 140476 ACTGCATTAATACTGTCAAGACTATCGCCGCCTTCAATAACAACGCAAGAACTGAACTGG 140535 || || || ||| || || ||||||| || || | || || || |||||||| Sbjct 158573 GTGGCGTTGATGGAGTCCAGGCTGTCGCCGCACTCGATCAGCACACAGGAGCTGAACTGA 158632 Query 140536 CGAGTCGGAGTACGTACACCGGCCATAATTGGAGTAGGCAGAGAAATCT--GACGTTTAG 140593 || || || || ||||| || | ||| ||||| || ||||| || || | |||| || Sbjct 158633 CGTGTTGGGGTGCGTACGCCAGACATGATTGGCGTCGGCAGGGAGATTTTAAACGTCGAG 158692 Query 140594 ATACGGCATTATAGAAACG 140612 || |||| ||||||||| Sbjct 158693 AT--CGCATCATAGAAACG 158709 >seq4 Length=447486 Score = 102 bits (112), Expect = 8e-17 Identities = 72/81 (89%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 67174 AATTTGGTGGCCCTTACTGGATTTGAACCAGTGACCAATCGATTATGAGTCGACTGCTCT 67233 ||||||||||||| | |||| |||||||||| |||||| ||||||||||||| ||||||| Sbjct 299305 AATTTGGTGGCCCCTGCTGGGTTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCT 299246 Query 67234 ATCCATCTGAGCTAAAGGGCC 67254 | ||| ||||||||| ||||| Sbjct 299245 AACCA-CTGAGCTAAGGGGCC 299226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 518553913339640