Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq3 145 2e-30 >seq3 Length=630259 Score = 145 bits (160), Expect = 2e-30 Identities = 174/234 (74%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 40174 GAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40233 |||||||| ||| | |||||||| || ||||| || ||||||||||| || ||||| | Sbjct 614700 GAAGTCGACGTCGAAATCGGGCATCGAGACGCGTTCCGGGTTCAGGAAGCGTTCGAACAG 614641 Query 40234 GAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATCCCGAG-GCAGTAGGCGACCAGCGAAC 40292 || | ||||| ||||||| |||||||| || ||| ||||| ||||| |||| Sbjct 614640 CAGGTCAAATTCCAGCGGATCGATATCGGTGATTTTCAGCGCA-TAGGCCACCAGTGAAC 614582 Query 40293 CGGCTGCCGAGCCTCGCCCAGGACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGA 40352 |||| | || || ||||| || |||||| ||||||||| ||||| | ||| ||||| Sbjct 614581 CGGCACCGGAACCACGCCCCGGCCCGACCGGCACGCCGTTGTCCTTCGACCACTGGATGA 614522 Query 40353 AGTCGGCGACGACCAGGAAGTAGGACGGGAAGCCCATCTGGATGATCATGTCGA 40406 | || |||| |||||||||| ||||| ||||||||| | || | || || Sbjct 614521 ACTCCATTACGATCAGGAAGTAGCCGGGGAAACCCATCTGGTTAATAACGTTGA 614468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160394268163206