Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_028829.1 Length=248088 Score E Sequences producing significant alignments: (Bits) Value seq1 120 5e-22 seq3 96.9 6e-15 >seq1 Length=970878 Score = 120 bits (132), Expect = 5e-22 Identities = 289/431 (67%), Gaps = 10/431 (2%) Strand=Plus/Plus Query 236259 TACACTGTAGTCAAGATGACGAATACGGTTTTCTTCAACACCTTTGTTGTTCTTCAGAAC 236318 ||||| ||||| | ||||| | ||||| |||||||||| |||||||||||| || Sbjct 158281 TACACCATAGTCCATGTGACGCACGCGGTTGCCTTCAACACCACGGTTGTTCTTCAGCAC 158340 Query 236319 TAACAGTTTTTCAACTTCTAAGTGCCAAATCGGGTAAGTTAGAGTCGCAGCACCACCACG 236378 | ||| |||| | ||| | ||||| |||||||| || || || || || ||||| Sbjct 158341 CAGCAGGCTTTCGATTTCCAGATGCCACATCGGGTAGAACAGCGTGGCTGCGCCGCCACG 158400 Query 236379 TACACCACCTTGAGAACACGATTTAACCGCAGTTTGAAAGTGTTTCCAGAATGGAATTAC 236438 || || || |||||||| || || ||||| || || || || || |||| || | ||| Sbjct 158401 AACGCCGCCCTGAGAACAGGACTTCACCGCGGTCTGGAAATGCTTGTAGAACGGGA-TAC 158459 Query 236439 A-CCAGTGTG--ACGAATCTCACCTGAACGAA--CGACTGCCCCTTCAGCACGAATCGCA 236493 | || || || ||| ||||| |||| | |||||| ||||| || | Sbjct 158460 AGCCGGTATGGAACG--CTTCACCGCCGCGAATCGGGCTGCCC--AGCGCACGGATACGA 158515 Query 236494 CCGCCATTCACACCGATACCTGCACGCTTACTAATGTAACTTACAATTGATTTAGCCACT 236553 ||| | || | |||||| || ||||||| | | || | ||||||| | | Sbjct 158516 CCGGCGTTGATACCGATGCCGGCACGCTGAGAGACATATTTCACAATTGCGCTGGAGGTG 158575 Query 236554 TCATTGATTGAATGCAAAGAGTCGCCTGATTCAATCTTAACACACGAACTAAACTGGCGT 236613 | ||||| || | || |||||| | || ||| ||||| || || ||||| ||| Sbjct 158576 GCGTTGATGGAGTCCAGGCTGTCGCCGCACTCGATCAGCACACAGGAGCTGAACTGACGT 158635 Query 236614 GTCGGGGTACGAACGCCTGCCATAATCGGTGTCGGTAATGAAAGTTTGTGAGTCGAAACT 236673 || ||||| || ||||| | ||| || || ||||| | || | ||| ||||| | Sbjct 158636 GTTGGGGTGCGTACGCCAGACATGATTGGCGTCGGCAGGGAGATTTTAAACGTCGAGATC 158695 Query 236674 GCATTGTAGAA 236684 |||| ||||| Sbjct 158696 GCATCATAGAA 158706 >seq3 Length=630259 Score = 96.9 bits (106), Expect = 6e-15 Identities = 232/350 (66%), Gaps = 1/350 (0%) Strand=Plus/Plus Query 125179 CACACGTA-CACTGATCAATCGGGGTATTCGTACCGAAGTAAGCTACTTTAGTGTAAGCA 125237 ||| |||| |||| ||||||||||||||| || ||| | || | || ||| Sbjct 228367 CACTCGTAGCACTCATCAATCGGGGTATTGGTGCCGTAATAGGGCACGCGGTCGTAGCTG 228426 Query 125238 TAATCCCATACGCGCTCTAGACCTTTGATGTTGTCTCGCATATTCGGGAACTCAGCATAA 125297 |||||||| || ||| || | |||| ||||| ||| ||||||| | || | ||| Sbjct 228427 TAATCCCAGACATCCTCCAGCGCCTTGAGGTTGTGCTGCACATTCGGGTATTCGCCGTAA 228486 Query 125298 CAGATGAAACCACCGTTTGCATGAATTGGGTATGCAGCTTCAAAATCAATTTTCTCAAAT 125357 |||||||| || || || || | || || | |||||||| || ||||| || | Sbjct 228487 CAGATGAATCCGCCATTCGCCAGCGGCGGATAGGGCGCTTCAAAGTCGATTTTGTCGTAA 228546 Query 125358 GGGTTCACTTTCTTGAACACGTCTAAGTGAAACGAGTTTGTGTAATAGTCTTTGTCATTG 125417 || || || ||||| ||||| | || || ||| ||||| ||| | ||||| | Sbjct 228547 GGATTGACCTTCTTCTCAACGTCGAGATGGAAGCTGTTGGTGTAGTAGCCCTTGTCGGTA 228606 Query 125418 ATACCTGTAATAACACCGTATTTCTCTTGGTCGAGACGACAGAAACGATCACATAGCGAT 125477 | |||| | | || | | | | || ||||| ||||| || || || || Sbjct 228607 ACGCCTGGCACCAGGCCAAACTGCGCCGCATCAAGACGGCAGAAGCGGTCGCACAGATTC 228666 Query 125478 TCACTTGGTGTACTGTACAGACTGAAACCGTAGCCCGTCAGTTCTTTCCA 125527 || ||||| || ||||| || ||||| || ||||| || | ||||||| Sbjct 228667 TCGCTTGGCGTGCTGTAAAGGCTGAACCCATAGCCTGTTTCTGCTTTCCA 228716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 793690407291520