Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_028881.1 Length=170473 Score E Sequences producing significant alignments: (Bits) Value seq1 134 2e-26 >seq1 Length=970878 Score = 134 bits (148), Expect = 2e-26 Identities = 278/411 (68%), Gaps = 2/411 (0%) Strand=Plus/Plus Query 142849 CATAAGGTCGTTCAACTGGATTCCGTAGTCCATATGACGAATACGGTTCTCATCAACGCC 142908 ||| || | ||| | ||| | || |||||||| ||||| | ||||| | ||||| || Sbjct 158263 CATCAGCTTGTTGAGCTGTACACCATAGTCCATGTGACGCACGCGGTTGCCTTCAACACC 158322 Query 142909 TTTGTTGTTTTTCAGAACGAGCAGATTTTCAACTTCCAAATGCCAAATAGGATAATA-AG 142967 |||||| ||||| || ||||| |||| | ||||| |||||| || || || | || Sbjct 158323 ACGGTTGTTCTTCAGCACCAGCAGGCTTTCGATTTCCAGATGCCACATCGGGTAGAACAG 158382 Query 142968 CAGTAGCAGCGCCGCCACGGATTCCACCTTGTGAACATGATTTAACTGCAGTCTGGAAAT 143027 | || || ||||||||||| | || || || ||||| || || || || |||||||||| Sbjct 158383 C-GTGGCTGCGCCGCCACGAACGCCGCCCTGAGAACAGGACTTCACCGCGGTCTGGAAAT 158441 Query 143028 GCTTCCAGAATGGAATAACACCGGTATGTTTGACTTCACCCATACCAATACGAGAACCTT 143087 |||| |||| || ||| |||||||| ||||||| | ||| | || Sbjct 158442 GCTTGTAGAACGGGATACAGCCGGTATGGAACGCTTCACCGCCGCGAATCGGGCTGCCCA 158501 Query 143088 CAGCACGAATCATACCAACGTTGATACCAATACCTGCACGTTTAGAAATATACTCGATTA 143147 ||||| || ||| |||||||||| || || ||||| | ||| | ||| | | | Sbjct 158502 GCGCACGGATACGACCGGCGTTGATACCGATGCCGGCACGCTGAGAGACATATTTCACAA 158561 Query 143148 TTGAGTTAGCAGTTTTATTAATTGATTTCAGCGAGTCACCTGCTTCAATAACAACGCAAG 143207 ||| | | | || || || || | ||| ||| || || || | || || | Sbjct 158562 TTGCGCTGGAGGTGGCGTTGATGGAGTCCAGGCTGTCGCCGCACTCGATCAGCACACAGG 158621 Query 143208 AACTAAACTGACGGGTCGGGGTACGAGCACCAGCCATAATAGGAGTAGGCA 143258 | || |||||||| || ||||| || | |||| ||| || || || |||| Sbjct 158622 AGCTGAACTGACGTGTTGGGGTGCGTACGCCAGACATGATTGGCGTCGGCA 158672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545342180488920