Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_028927.1 Length=167298 Score E Sequences producing significant alignments: (Bits) Value seq13 199 4e-46 seq2 134 1e-26 seq1 120 3e-22 seq795 82.4 8e-11 >seq13 Length=199142 Score = 199 bits (220), Expect = 4e-46 Identities = 151/178 (85%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 131507 CTCTCAGTAAAGGTACGAGCAATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAG 131566 || |||||||||||||| | ||| |||||||||||||| || || || || |||||||| Sbjct 145331 CTTTCAGTAAAGGTACGGGTAATCACGTCGCGCTGCTGCTCAGGCGTGAGTGAGTTAAAA 145390 Query 131567 CGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACT 131626 || || ||||| || || || ||||| |||||||||||||| ||||| ||||| |||||| Sbjct 145391 CGCACGGCATAGCCTGAAACGCGGATAGTCAGCTGCGGATAGTTTTCAGGATGTTTAACT 145450 Query 131627 GCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAA 131684 ||||||||||| ||||| || ||||||||||| |||||||| || || |||||||||| Sbjct 145451 GCATCTTCCAGCGTTTCGCGGCGCAGAACGTTGACGTTCAGATGCTGTCCACCTTCAA 145508 >seq2 Length=722220 Score = 134 bits (148), Expect = 1e-26 Identities = 136/177 (77%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 131509 CTCAGTAAAGGTACGAGCAATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCG 131568 || ||| ||||| || | ||| || || ||||||| || |||||| ||||||||||| Sbjct 515055 CTTAGTGAAGGTTCGGGTAATCACATCCTGCTGCTGCTCTTTAGTCAGTGAGTTAAAGCG 515114 Query 131569 AACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGC 131628 || || |||||||| || || |||||||| ||||||||||| || ||||| | | || Sbjct 515115 CACAGCGTAACCGGAAACGCGAATGGTCAGTTGCGGATATTTCTCTGGATGTTCCATCGC 515174 Query 131629 ATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAAT 131685 ||| ||| ||||||| || |||||||||||| ||||| ||||| ||||| || Sbjct 515175 ATCCAGCAGCATTTCACGGTTCATAACGTTAACGTTGAGGTGCTGACCGCCTTCGAT 515231 >seq1 Length=970878 Score = 120 bits (132), Expect = 3e-22 Identities = 204/293 (70%), Gaps = 2/293 (1%) Strand=Plus/Plus Query 43562 TTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACACCTTTGTTATTT 43621 || || || |||||||| ||||| ||||| | |||||| |||| ||||| ||| || Sbjct 158273 TTGAGCTGTACACCATAGTCCATGTGACGCACGCGGTTGCCTTCAACACCACGGTTGTTC 158332 Query 43622 TTCAAAACAAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATA-AGCAGTAGCAGC 43680 |||| || || || |||| | ||||| |||||| || || || | ||| || || || Sbjct 158333 TTCAGCACCAGCAGGCTTTCGATTTCCAGATGCCACATCGGGTAGAACAGC-GTGGCTGC 158391 Query 43681 GCCGCCACGAATTCCACCTTGTGAGCATGATTTAACAGCAGTCTGAAAATGTTTCCAAAA 43740 ||||||||||| || || || || || || || || || ||||| ||||| || | || Sbjct 158392 GCCGCCACGAACGCCGCCCTGAGAACAGGACTTCACCGCGGTCTGGAAATGCTTGTAGAA 158451 Query 43741 AGGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTCGGCACGAAT 43800 || ||| || |||||| ||||||| || |||| || ||||| || Sbjct 158452 CGGGATACAGCCGGTATGGAACGCTTCACCGCCGCGAATCGGGCTGCCCAGCGCACGGAT 158511 Query 43801 CATACCAACGTTAATACCAATTCCAGCACGTTTGGAGATATATTCAACAATTG 43853 ||| |||| ||||| || || ||||| | |||| ||||| ||||||| Sbjct 158512 ACGACCGGCGTTGATACCGATGCCGGCACGCTGAGAGACATATTTCACAATTG 158564 >seq795 Length=5257 Score = 82.4 bits (90), Expect = 8e-11 Identities = 89/114 (78%), Gaps = 7/114 (6%) Strand=Plus/Minus Query 140713 GCGCTCTACCAAACTGAGCTACACGGAGTAAATTAAATTGGAGCGGATAATGAGAATCGA 140772 |||||||||||| |||||| | | || | || |||||||| | | ||||||| Sbjct 4406 GCGCTCTACCAA-CTGAGCCATATC-AGCACATC----TGGAGCGGGCAGCGGGAATCGA 4353 Query 140773 ACTCACATCATCAGATTGGAAGTCTGAGGTAATA-CCATTATACGATATCCGCA 140825 || | ||||||||| ||||||| ||||||||||| |||||||||||| ||||| Sbjct 4352 ACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCCATTATACGATGCCCGCA 4299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535182989351920