Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_029013.1 Length=177688 Score E Sequences producing significant alignments: (Bits) Value seq1 215 6e-51 seq3 178 1e-39 seq13 165 9e-36 >seq1 Length=970878 Score = 215 bits (238), Expect = 6e-51 Identities = 352/503 (70%), Gaps = 12/503 (2%) Strand=Plus/Plus Query 76977 GCGCGTTCCTGAACAAGCAACTGGAACAAATCTGCTGCTTTAATGCGTTTCTTGCGTACC 77036 ||||||||||| | | || ||| | ||| | ||||||| || | |||||| | Sbjct 158072 GCGCGTTCCTGCATCATCAGTGAGAAGAGATCGACCGCTTTAACACGCTGCTTGCGGATG 158131 Query 77037 GTTGGGTCTTTTTCCAAACTGGTATAGAGTTCTTCGAACTCAGTCTGATCAGCTTGATAG 77096 | | || | || | |||||||||| || |||||| ||||| || || || Sbjct 158132 CTCTGATCCTGCTCATATTTGGTATAGAGGCGCTCAAACTCATCCTGATTGGC--GA-AG 158188 Query 77097 AAAGCATCATACAGGCGATCATTTGCAACGTCAG---GGCTGAACAGTGTGATGTAATCG 77153 || || |||||||||| | ||| |||||| |||||||||| ||||| | ||| Sbjct 158189 AATGCGTCATACAGGCCAG-----GCA-CGTCAGACGGGCTGAACAGGGTGATATCTTCG 158242 Query 77154 TTATTGATTAAACGCTTATACATCAAATCGTTAAGCTGAACGCCATAATCCAGGTGACGA 77213 || | | |||| |||||||| | ||| ||||| || ||||| |||| |||||| Sbjct 158243 CCTTTCAGCAGGCGCTGATACATCAGCTTGTTGAGCTGTACACCATAGTCCATGTGACGC 158302 Query 77214 ATACGGTTATTCTCAACACCTTTGTTGTTTTTCAGAACCAGCAGGTTTTCAACTTCCAAA 77273 | ||||| |||||||| |||||| ||||| ||||||||| |||| | ||||| | Sbjct 158303 ACGCGGTTGCCTTCAACACCACGGTTGTTCTTCAGCACCAGCAGGCTTTCGATTTCCAGA 158362 Query 77274 TGCCAGATCGGATAATACAACGTTGCAGCACCACCACGAACGCCACCTTGTGAACAGGAT 77333 ||||| ||||| || ||| ||| || || || ||||||||||| || || |||||||| Sbjct 158363 TGCCACATCGGGTAGAACAGCGTGGCTGCGCCGCCACGAACGCCGCCCTGAGAACAGGAC 158422 Query 77334 TTAACCGCTGTCTGAATATGTTTCCAGAACGGGATCACGCCTGTATGTACTGCTTCACCA 77393 || ||||| ||||| | ||| || |||||||||| ||| ||||| | |||||||| Sbjct 158423 TTCACCGCGGTCTGGAAATGCTTGTAGAACGGGATACAGCCGGTATGGAACGCTTCACCG 158482 Query 77394 CCACGGATTTTAGAACCCATTGCGCGAATGTGTCCAGCATTAACACCGATACCCGCGCGT 77453 || || || |||| || || || | || || || | |||||| || || || Sbjct 158483 CCGCGAATCGGGCTGCCCAGCGCACGGATACGACCGGCGTTGATACCGATGCCGGCACGC 158542 Query 77454 TGTGAAATATACTTCACGATCGC 77476 || || | ||| ||||| || || Sbjct 158543 TGAGAGACATATTTCACAATTGC 158565 >seq3 Length=630259 Score = 178 bits (196), Expect = 1e-39 Identities = 569/870 (65%), Gaps = 12/870 (1%) Strand=Plus/Plus Query 141621 GATATCTGGGTACATACGTTTCGAAGCGCATTCCAGAGCCAATTGTTTGATGTCATAGTT 141680 ||| || || ||||| || || ||||| ||||| |||| ||||||||| || || || Sbjct 229212 GATGTCGGGATACATCCGCTTGCTGGCGCACTCCAGCGCCAGTTGTTTGATATCGTAATT 229271 Query 141681 ACGATCCCCAGGATTCATGTTTACACCTTTTTCCATAAACATGACCAGTTTAGGGAACAC 141740 | || || | ||| || |||| || | ||||||||||||||||| Sbjct 229272 AACGTCGCCCGCCCGGCGGTTGACGCCTTCGCGAATGCTGAACACCAGTTTAGGGAACAC 229331 Query 141741 AGGGGTAATACCTTGTTTACCCAGACCACGAATACGGTTTTTCAGAATCGCTTTCTGGAT 141800 | || | | | ||||||||| || | ||||| |||||||| | ||| || Sbjct 229332 CGCCGTCTTGCGATTTTTACCCAGTCCGGCCAGCCGGTTAAGCAGAATCGACTGCTGAAT 229391 Query 141801 CATTCGTTCAAACATTCCCGTACCAGTACCGAAAGTAATAGTAACGAAAGGTGTTTGTCC 141860 || || | | |||| || ||| ||| || || || || || || || || Sbjct 229392 CAGCCGGGCCGCCCAGTCCGTCCCCAGACCAAAACCAAAGGTGACAAACGGCGTCTGGCC 229451 Query 141861 GTTGGCAGTATGCAGCGTGTTAACTTCGTATTCATACGATTGGAAAGCATCAAA-CACAT 141919 |||||| || ||||| || || || || ||||| ||| || || || || | ||| | Sbjct 229452 GTTGGCGGTGTGCAGGGTATTCACCTCATATTCCAGCGACTGAAAGGCGTCGTAGCAC-T 229510 Query 141920 CTTTTTCAGTCTTTTCCATCGCATA-TGTACGATCCAACGAAATTTTATACTTTTTAGCA 141978 |||| || || | |||||| || || || || || | ||| | |||| Sbjct 229511 CTTTCTCCGTACGCTGGCGCGCATACTGCTCGG-CCTGCGGGATCTGCCACTGCTCAGCA 229569 Query 141979 TCCTTAACATGCTTTTCATATGTCATTTCTGCATACGGAGCCAGCACTTTATCAA--CGT 142036 | | |||| |||| || || || |||| |||||||||| ||||| || Sbjct 229570 ATCGCCAGATGCCGGGCATAGCTCTGCTCAACAAACGGGGCCAGCACTTCATCAATACGG 229629 Query 142037 TTGCAAAGGTTGTCCCGCCGTACTGGTGAGAAGCAATCTGTGCGGTGATCTGTGCCATAA 142096 || || ||| || |||||||| || || | ||| ||| ||||||| ||| | | Sbjct 229630 TT--AATGGTGGTGCCGCCGTAAATATGGCTGGCGACCTGCGCGATGATCTGCGCCGTCA 229687 Query 142097 GAGCAGTCGCAACACCGATTGATTTCGGGGGTTCGATGTCTGCGTTACCCATCTTGAAGC 142156 || || || |||| ||||| || || ||||| || || || ||||| ||||| | Sbjct 229688 CGGCGGTGGCGGTGGCGATCGATTTAGGCGGCTCGATCTCAGCATTGCCCATTTTGAAAC 229747 Query 142157 CATTAGCCAGCATACCTTTCAAATCCACCAGACAGCAGTTTGTGTATGGCGT-GAACGGG 142215 | || | |||||| ||||||| ||| | ||| |||||| | || | | ||| ||| Sbjct 229748 CGTTGGTCAGCATGCCTTTCAGATCGATCAGCATGCAGTT-GAACATCGGGAAGAAAGGG 229806 Query 142216 CTGTAATCCAGATCATGATAGTGGATGTCGCCGGAGTCATGCGCTTCTACGATATGTTTC 142275 ||| || ||||| ||||||||||| |||||| || ||||| || | || | Sbjct 229807 GAGTAGTCGAGATCGTGATAGTGGATCTCGCCGCGCTCGTGCGCCAGCACCACATCGCGC 229866 Query 142276 GGAAGGATATGATTACGGGCGAAATGCTTCGCTACAATACCCGCCAGCAAATCGCGCTGT 142335 || ||||| || | | ||| | || || || || || || ||||||| ||||||||| Sbjct 229867 GGCAGGATCTGCTGCTGTGCGTAGTGTTTTGCCACGATCCCGGCCAGCAGATCGCGCTGC 229926 Query 142336 GTCGGGAATACCCTTGC-GTCTTTGTTCGCGTTCTCGTTGGTGATCTCTTTGTTGGACAG 142394 |||||| || | |||| ||||||||| || |||||||| | | | |||| | | Sbjct 229927 GTCGGG-ATCACTTTGCTGTCTTTGTTGGCATTCTCGTTCAGCAGCGCCGCATTGGTCTG 229985 Query 142395 ATTCACCATACCGGAGATATCTTTGAACAGCTTACTTTTCTGTTCACGGGCAATATCGCG 142454 || |||| ||| || | | | || || | | || ||||| | |||||| Sbjct 229986 ATCGACCAGTCCGCGAATGGCGTGATGTAACTGGCTCTGACGATCGCGGGCGACATCGCG 230045 Query 142455 ATCGTGACGATATTCGATGTATGCACGGGC 142484 |||||| || ||||| ||||| || ||||| Sbjct 230046 ATCGTGGCGGTATTCAATGTAGGCGCGGGC 230075 >seq13 Length=199142 Score = 165 bits (182), Expect = 9e-36 Identities = 144/179 (80%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 67750 CTTTCCGTAAAGGTTCTGGCGATAACGTCGCGCTGTTGTTCTGGAGTCAGTGCATTAAAG 67809 ||||| |||||||| | || || ||||||||||| || || || || |||| ||||| Sbjct 145331 CTTTCAGTAAAGGTACGGGTAATCACGTCGCGCTGCTGCTCAGGCGTGAGTGAGTTAAAA 145390 Query 67810 CGAACTGCGTAACCTGAAACGCGGATCGTTAACTGTGGGTACTTCTCAGGATGTTTCACA 67869 || || || || |||||||||||||| || | ||| || || || ||||||||||| || Sbjct 145391 CGCACGGCATAGCCTGAAACGCGGATAGTCAGCTGCGGATAGTTTTCAGGATGTTTAACT 145450 Query 67870 GCATCTTCCAGGGTTTCGCGACGTAGCACATTCACGTTTAGGTGCTGTCCACCTTCAAC 67928 ||||||||||| |||||||| || || || || ||||| || ||||||||||||||||| Sbjct 145451 GCATCTTCCAGCGTTTCGCGGCGCAGAACGTTGACGTTCAGATGCTGTCCACCTTCAAC 145509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568428342395520