Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_029042.1 Length=156833 Score E Sequences producing significant alignments: (Bits) Value seq4 96.9 3e-15 seq1 96.9 3e-15 >seq4 Length=447486 Score = 96.9 bits (106), Expect = 3e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 19443 TGGTGACCCTGGCTGGACTTGAACCAGCGACCAATCGATTATGAGTCGACTGCTCTAACC 19502 ||||| ||| ||||| |||||||||||||||| ||||||||||||| ||||||||||| Sbjct 299301 TGGTGGCCCCTGCTGGGTTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTAACC 299242 Query 19503 ACTGAGCTACGGG 19515 ||||||||| ||| Sbjct 299241 ACTGAGCTAAGGG 299229 >seq1 Length=970878 Score = 96.9 bits (106), Expect = 3e-15 Identities = 286/434 (66%), Gaps = 13/434 (3%) Strand=Plus/Minus Query 102612 CTTCCAACACCTATTATGTCCGGCGTCCGCACCCCGACCCGACAGTTCAGCTCTTGTGTA 102671 || || || || || ||||| ||||| |||||||| || || ||||||||||| ||||| Sbjct 158673 CTGCCGACGCCAATCATGTCTGGCGTACGCACCCCAACACGTCAGTTCAGCTCCTGTGTG 158614 Query 102672 TTGATC-AAACTGGTGACACATTGGACTCAATTAATGCCACTGCGAAAAGCATCGTGGAT 102730 ||||| | || |||| ||||||| || || ||||| | | || ||| | Sbjct 158613 CTGATCGAGTGCGGCGACAGCCTGGACTCCATCAACGCCACCTCCAGCGCAATTGTGAAA 158554 Query 102731 TATGTTTCCAAACGTGCTGGCATCGGATTCGATGTTGGGGCAATTCGTGGCATTGGTAGC 102790 ||||| || | ||||| |||||||| || | | || || |||| | || ||| Sbjct 158553 TATGTCTCTCAGCGTGCCGGCATCGGTATCAACGCCGGTCGTATCCGTGCGCTGGGCAGC 158494 Query 102791 CCTATCCGTAAAGGGGAAATGGTCCATACAGGTCTG-GTTCCATTCATCAAGTATTT--- 102846 || || || || ||| | ||||||| || ||| | || ||| |||| |||| Sbjct 158493 CCGATTCGCGGCGGTGAAGCGTTCCATACCGG-CTGTATCCCGTTCTACAAGCATTTCCA 158435 Query 102847 GACTGGTGCCCTGAAGTCTTGCTCTCAAGGCGGTATCCGTGGTGGATCGGCAACATGCTA 102906 ||| || ||||||| || ||||| ||||| | ||||| || | || || ||| Sbjct 158434 GAC---CGCGGTGAAGTCCTGTTCTCAGGGCGGCGTTCGTGGCGGCGCAGC--CACGCTG 158380 Query 102907 TGTT--CCCATCTGGCATTATCAATTTGATGATGTCGTTGTTCTCAAAAACAACCGTGGA 102964 | | || || |||||| || | || | | || || || ||||||||||| Sbjct 158379 TTCTACCCGATGTGGCATCTGGAAATCGAAAGCCTGCTGGTGCTGAAGAACAACCGTGGT 158320 Query 102965 TTGGAAGAGAACCGTGAACGCCGTATCGACTATGGGATTCAGATTAACCGCGTTATGTTC 103024 | |||| ||||| | || | || |||||||| | ||| | ||| | |||| Sbjct 158319 GTTGAAGGCAACCGCGTGCGTCACATGGACTATGGTGTACAGCTCAACAAGCTGATGTAT 158260 Query 103025 GAGCGCCTGGTGAA 103038 |||||||| |||| Sbjct 158259 CAGCGCCTGCTGAA 158246 Score = 86.0 bits (94), Expect = 6e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 18949 TAATCCTGGCGACGATGGCAGGACTTGAACCTGCGACATACGGTTTAACAGACCGCCGTT 19008 |||| ||||| | || | ||||| ||||| | ||||||||| ||||||| |||||||| Sbjct 403650 TAATTCTGGCTCCTCTGACTGGACTCGAACCAGTGACATACGGATTAACAGTCCGCCGTT 403709 Query 19009 CTACCGACTGAACTACA 19025 ||||||||||||||||| Sbjct 403710 CTACCGACTGAACTACA 403726 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 18949 TAATCCTGGCGACGATGGCAGGACTTGAACCTGCGACATACGGTTTAACAGACCGCCGTT 19008 ||||| |||| | || | ||||| ||||| | ||||||||| ||||||| |||||||| Sbjct 479392 TAATC-TGGCTCCTCTGACTGGACTCGAACCAGTGACATACGGATTAACAGTCCGCCGTT 479450 Query 19009 CTACCGACTGAACTACA 19025 ||||||||||||||||| Sbjct 479451 CTACCGACTGAACTACA 479467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 501697655415320