Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_029120.1 Length=60875 Score E Sequences producing significant alignments: (Bits) Value seq174 154 6e-33 >seq174 Length=42168 Score = 154 bits (170), Expect = 6e-33 Identities = 233/328 (71%), Gaps = 10/328 (3%) Strand=Plus/Minus Query 27086 ATTACCGCGATAACGCCATAACCTACAAAGAGCAGCGCGATAAAAAAGTCAGTGAGCTGG 27145 ||||||| | || ||||| |||||| | |||||| || | | ||| || Sbjct 27132 ATTACCGAGGCAATGCCATTGACTACAAGGCGCAGCGTGACACGGCAAGCAGCAGCCTAA 27073 Query 27146 AGCTGGCAAATGCAACCATTACTGATATGCAGCAGCGCCAGCGTGATGTTGCTGCACTTG 27205 ||||||| |||| ||||| ||| |||||||| | | ||||||||||| | || |||| Sbjct 27072 AGCTGGCTAATGACACCATCACTTATATGCAGACGAGACAGCGTGATGTGGACGCGCTTG 27013 Query 27206 ATGCCAGATACTCGAGGGAATTAGCCGATGCGAGAGCTGAAAATGAAACTCTTC-GCGCT 27264 |||| | |||| | | ||| | || ||||| | |||| | ||| |||||| || | Sbjct 27012 ATGCGAAATACACCAAGGAGCTGGCAGATGCCAAAGCTAAGCTTGATTCTCTTCAGCAGT 26953 Query 27265 GACGTTGCCGCTGGTTACCGCAGCCTGCGGATCAACGCCACCTGTCCAGGTCCCGTGCGT 27324 | |||| ||||| | || | ||||| ||||||| | ||| |||| | Sbjct 26952 G-CGTTAGTTCTGGTAAATGCGGGCTGCGCCTCAACGCAATCTG-------CCCGAAAGG 26901 Query 27325 GAA-GCCACCGGCACCGCCCGCGTGGATAATGCAACCGGCCCCCGACTGGCAGACACCGC 27383 || ||| |||||||| || |||||||| ||||| || || ||||||| | ||| |||| Sbjct 26900 TAACGCCTCCGGCACCACCGGCGTGGATGATGCAGCCAGCGCCCGACTTACTGACGCCGC 26841 Query 27384 TGAACGGGATTATTTCACCCTCAGAGAG 27411 | |||||||||||||||||||||||||| Sbjct 26840 TCAACGGGATTATTTCACCCTCAGAGAG 26813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194663676107586