Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq155 107 1e-18 seq42 98.7 7e-16 seq75 93.3 3e-14 >seq155 Length=45769 Score = 107 bits (118), Expect = 1e-18 Identities = 147/203 (72%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 23606 TTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACT 23665 ||| | |||| || || || || ||||||||||| || || ||||| ||||| || || | Sbjct 4074 TTACAGTGCAAATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGT 4015 Query 23666 CCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCA 23724 | | ||||| | || || | || || || | | ||||| ||||| | |||||| Sbjct 4014 CGTCCGACACGATCGACAACGTCAAGACCAAGA-TCCAAGACAAGGAAGGCATCCCGCCA 3956 Query 23725 GATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGAT 23784 || || || ||| | || ||||||||||| || || || || | ||||| || | ||| Sbjct 3955 GACCAGCAACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGAC 3896 Query 23785 TACAACATACAAAAAGAGTCCAC 23807 |||||||| ||||| ||||| || Sbjct 3895 TACAACATCCAAAAGGAGTCGAC 3873 >seq42 Length=101213 Score = 98.7 bits (108), Expect = 7e-16 Identities = 141/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 23613 GCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGA 23672 ||| || || || || || || ||||| || |||||||| ||||| || || || | || Sbjct 46345 GCAAATCTTTGTCAAGACTCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGA 46286 Query 23673 CACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAAC 23731 ||| | || || | || || || | | ||||| ||||| | |||||||| || | Sbjct 46285 CACGATCGACAACGTCAAGACCAAGA-TCCAAGACAAGGAAGGCATCCCGCCAGACCAGC 46227 Query 23732 AGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACA 23791 | ||| | || ||||||||||| || || || || | ||||| || | ||| ||||||| Sbjct 46226 AACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTACAACA 46167 Query 23792 TACAAAAAGAGTCCAC 23807 | ||||| ||||| || Sbjct 46166 TCCAAAAGGAGTCGAC 46151 >seq75 Length=70221 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || || ||||| || |||||||| ||||| || || || || Sbjct 216 ATGCAGATCTTTGTCAAGACGCTGACGGGCAAGACGATCACGCTCGAGGTCGAGTCGTCG 275 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || || | || || || | || ||||| ||||| | || ||||| || Sbjct 276 GACACGATCGACAACGTCAAGACCAAGA-TTCAGGACAAGGAAGGCATTCCCCCAGACCA 334 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| || || || || ||||| || || || || | || || | | |||||||| Sbjct 335 GCAGCGATTGATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGTACGCTCGCGGATTACAA 394 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 395 CATCCAGAAGGAGTCGAC 412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337983362955452