Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_031007.1 Length=223935 Score E Sequences producing significant alignments: (Bits) Value seq1 257 2e-63 seq4 210 3e-49 >seq1 Length=970878 Score = 257 bits (284), Expect = 2e-63 Identities = 391/554 (71%), Gaps = 12/554 (2%) Strand=Plus/Plus Query 88180 AAGCAACTCATCTTCTCCACAGGGGAAGCCGGATGCGGTAAGACCTTCATGGCCACCGCC 88239 || || || |||||| | || || |||||||| |||||||| |||| || |||| Sbjct 538153 AAACAGCTGATCTTCGCAACCGGTGAAGCCGGGTGCGGTAAAACCTGGATCAGTGCCGCA 538212 Query 88240 TACGCGGTAGAGC----GATTACTGGCCAAAGACGTCGATCGTATCATTGTCACTCGCCC 88295 | |||| ||| ||||| | || || |||| | || || || || ||||| Sbjct 538213 AAAGCGGCTGAGGCCCTGATTAAT----AAGGATATCGACAGGATTATCGTTACGCGCCC 538268 Query 88296 TGTCCTCTCCGCAGATGAAGACTTAGGCTTCCTGCCGGGCGATGTTGGTGAAAAGTTCGC 88355 || || |||||||| || | || ||||| || |||||| || ||| || ||||| Sbjct 538269 GGTACTGCAGGCAGATGAGGATCTGGGATTCCTTCCCGGCGATATTTCTGAGAAATTCGC 538328 Query 88356 GCCTTACTTCCGACCTGTTTACGATGTGCTCTTAAAACGTCT--GGGCAGCCGTTTCTTA 88413 |||||| ||||| || ||||| || | || | |||||||| | ||| || || | Sbjct 538329 GCCTTATTTCCGCCCGGTTTATGACATTCTGGTTAAACGTCTTGGCGCATCC--TTTATG 538386 Query 88414 CAATACTGCCTGAAACCGGGTATAGACAAGGTTGAGATAGCTCCCTTCGCCTATATGCGT 88473 ||||| || ||| |||| || | |||||| ||||| || || ||||||||||||||| Sbjct 538387 CAATATTGTCTGCGTCCGGAAATTGCCAAGGTAGAGATTGCACCGTTCGCCTATATGCGT 538446 Query 88474 GGCCGCAACTTCGAGAACGCGGTCGTTATCTTAGATGAAGCTCAGAACACCACTGCTCAG 88533 || |||| ||||| || || || || || | || || || |||||| ||| || | Sbjct 538447 GGTCGCACTTTCGAAAATGCTGTGGTAATTCTGGACGAGGCGCAGAACGTCACCGCCGCG 538506 Query 88534 CAGATGAAGCTCTTCCTGACCCGTATCGGGGAGAACTGTATCGTTATCGTTAACGGTGAC 88593 |||||||| | ||||||||||| | || || ||| | || || |||||||| || Sbjct 538507 CAGATGAAAATGTTCCTGACCCGACTGGGCGAAAACGTCACGGTCATTGTTAACGGCGAT 538566 Query 88594 GTCACTCAGTGCGACTTACCTTCCGGGGTGAAGTCGGGACTGGCCGACGCATTAGCCCGT 88653 | || ||||||||||| || | |||||| || || || || ||||| | || ||| Sbjct 538567 ATTACCCAGTGCGACTTGCCCGCTGGGGTGCCTTCCGGTCTCGCAGACGCGCTGGCGCGT 538626 Query 88654 TTCGAAGAAGACGAATTAGTCGGCATCGTTCGTTTTACGAAAGATGACTGTGTGCGCTCT 88713 |||||||| ||||| | || ||||| || || || ||||| || |||||||| ||| Sbjct 538627 TTCGAAGAGGACGAGATGGTTGGCATTGTACGCTTCGGCAAAGAAGATTGTGTGCGTTCT 538686 Query 88714 CCGCTTTGTCAGCG 88727 |||| |||||||| Sbjct 538687 GCGCTGTGTCAGCG 538700 >seq4 Length=447486 Score = 210 bits (232), Expect = 3e-49 Identities = 229/304 (75%), Gaps = 0/304 (0%) Strand=Plus/Minus Query 99138 GAGCAATCATGGAACAGTATCAAGATTTAATGACTCGCGTAATGAGCGAAGGCGTGCCGA 99197 ||| || ||| ||||||||| ||||||||| | || || ||||||| ||| | Sbjct 112247 GAGGAAAAATGAAACAGTATCTGGATTTAATGCAACATGTGCTGCACGAAGGCACGCCAA 112188 Query 99198 AGAAAGACCGTACGGGAACCGGTACCCTGTCTATTTTCGGGCACCAGATGCGTTTCAATC 99257 | |||||||| || |||||||| || || ||||| || ||||||||||||||||||| Sbjct 112187 AAGCTGACCGTACCGGCACCGGTACGCTTTCAATTTTTGGTCACCAGATGCGTTTCAATC 112128 Query 99258 TGCAAGAAGGCTTTCCGCTGGTAACGACTAAGCGCTGTCACATGCGTTCGATTATTCACG 99317 |||| || || ||||||||||| || || ||| ||||| || || ||||||||||| | Sbjct 112127 TGCAGGATGGTTTTCCGCTGGTCACCACCAAGAAATGTCATATCCGCTCGATTATTCATG 112068 Query 99318 AACTGCTGTGGTTCCTGAAAGGCGATACCAATGTCAAATATTTAAATGATAATGGTGTAA 99377 | ||||||||||| ||||||||||||||||| || ||| | || || || || Sbjct 112067 AGCTGCTGTGGTTTCTGAAAGGCGATACCAACATCGGTTATCTCAAAGAAAACAACGTCT 112008 Query 99378 CTATTTGGGACGAATGGAAGAACAAAGATGGCGACCTCGGACCGGTATACGGTAAACAGT 99437 | || ||||| || ||| | | | ||||||| ||||| ||||| || || ||||||| Sbjct 112007 CCATCTGGGATGAGTGGGCGGATGAGAATGGCGATCTCGGCCCGGTGTATGGCAAACAGT 111948 Query 99438 GGCG 99441 |||| Sbjct 111947 GGCG 111944 Score = 131 bits (144), Expect = 2e-25 Identities = 222/319 (70%), Gaps = 2/319 (1%) Strand=Plus/Minus Query 99857 TCGTGTCAGCTTTATCAACGCAGCGCCGATGTGTTCTTAGGGGTGCCGTTTAATATTGCG 99916 || || ||||| ||||| ||| ||| | ||| | || |||||||||| || || Sbjct 111762 TCCTGCCAGCTCTATCAGCGCTCGTGCGACATCTTCCTGGGCCTGCCGTTTAACATCGCC 111703 Query 99917 TCATACGCTTTGTTGATCCACATGTTTGCACAGCAG-GCTAACATGACCGTGGGTGATTT 99975 || || ||| || | || ||| | || |||||| || | | || ||||| || || Sbjct 111702 AGCTATGCGTTGCTGGTACATATGGTGGCGCAGCAGTGCGATC-TGCAGGTGGGCGACTT 111644 Query 99976 CGTCTGGTCTGGTGGTGACGTACATCTGTACAATAACCATCTGGAACAAACCCGTACCCA 100035 ||||||| | || ||||| || || |||| |||||||||||| || | || || Sbjct 111643 CGTCTGGACCGGCGGTGATACCCACCTCTACAGTAACCATCTGGAGCAGGCGCGCCTGCA 111584 Query 100036 GTTAGGTCGTGCCCCGCGTCCGTTACCTAAGCTGATTATCAAACGTAAGCCAGACTCCAT 100095 | | || | ||||||||| | || || |||||||||| || || | || | Sbjct 111583 GCTGACCCGCGAACCGCGTCCGCTGCCATCACTTGTTATCAAACGCAAACCGGCGTCGCT 111524 Query 100096 CTTCGAATATAAGTTTGAAGACTTCGAACTTGAAGGCTACGACCCGCATCCTGCAATCAA 100155 || || ||| |||| ||||| || || ||||||||||||| |||||||| || ||||| Sbjct 111523 GTTTGACTATCAGTTCGAAGATTTTGAGATTGAAGGCTACGATCCGCATCCCGCGATCAA 111464 Query 100156 AGCACCGGTCGCGATATGA 100174 ||| || ||||| || ||| Sbjct 111463 AGCCCCTGTCGCCATCTGA 111445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716406960509800