Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_031020.1 Length=163201 Score E Sequences producing significant alignments: (Bits) Value seq2 159 4e-34 >seq2 Length=722220 Score = 159 bits (176), Expect = 4e-34 Identities = 139/173 (80%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 52719 AGTAAATGTACGAGAAATTACATCACGCTGTTGTTCTTTGGTCAGGGAGTTAAAGCGAAC 52778 ||| || || || | ||| ||||| |||| || ||||| ||||| ||||||||||| || Sbjct 515058 AGTGAAGGTTCGGGTAATCACATCCTGCTGCTGCTCTTTAGTCAGTGAGTTAAAGCGCAC 515117 Query 52779 AGCATAACCAGAAACACGGATAGTCAACTGTGGGTATTTTGTAGGGTCTTCCATCGCTTC 52838 ||| ||||| ||||| || || |||| || || ||||| || | ||||||||| || Sbjct 515118 AGCGTAACCGGAAACGCGAATGGTCAGTTGCGGATATTTCTCTGGATGTTCCATCGCATC 515177 Query 52839 AAGCAACATTTCACGATTCATTACGTTAACGTTCAGGTGCTGACCGCCTTCGA 52891 |||| ||||||||| ||||| ||||||||||| ||||||||||||||||||| Sbjct 515178 CAGCAGCATTTCACGGTTCATAACGTTAACGTTGAGGTGCTGACCGCCTTCGA 515230 Score = 118 bits (130), Expect = 1e-21 Identities = 76/83 (92%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 66399 aaaaTGGCACACCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCT 66458 || |||| || |||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 220892 AATATGGTACGCCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGGTGCTCT 220833 Query 66459 ATCCAGCTGAGCTAAGAGTGCAT 66481 ||||| |||||||||| | |||| Sbjct 220832 ATCCAACTGAGCTAAGGGCGCAT 220810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 522073633103640