Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_031043.1 Length=229501 Score E Sequences producing significant alignments: (Bits) Value seq1 235 8e-57 seq4 178 2e-39 >seq1 Length=970878 Score = 235 bits (260), Expect = 8e-57 Identities = 418/605 (69%), Gaps = 6/605 (1%) Strand=Plus/Plus Query 88096 CCTATTGAGGCCCGCAATGAAAACCAGCAGCAATACATGAATGCGCTGGAAACCAAACAA 88155 || ||||| ||||| |||||| ||| ||| || | || || | || | ||||| Sbjct 538099 CCAATTGAAGCCCGTAATGAAGCTCAGGCGCACTATCTTAACGCCATAGAGAGAAAACAG 538158 Query 88156 CTGATATTCGCCACCGGTGAAGCAGGGTGCGGTAAAACATTCCTTTGCGCCGCCTACGCT 88215 ||||| ||||| ||||||||||| |||||||||||||| | | | ||||| | || Sbjct 538159 CTGATCTTCGCAACCGGTGAAGCCGGGTGCGGTAAAACCTGGATCAGTGCCGCAAAAGCG 538218 Query 88216 GCCGAACGTCTACTGGCAAAAGACTTTGACCGTATCATTGTCACCCGTCCAGTCCTCTCT 88275 || || || | || || | ||| | || || || || || || || || Sbjct 538219 GCTGAGGCCCTGATTAATAAGGATATCGACAGGATTATCGTTACGCGCCCGGTACTGCAG 538278 Query 88276 GCAGATGAAGACCTTGGCTTCTTGCCCGGCGACGTCTCAGAGAAGTTCGCCCCTTACTTC 88335 |||||||| || || || ||| | |||||||| | || ||||| ||||| ||||| ||| Sbjct 538279 GCAGATGAGGATCTGGGATTCCTTCCCGGCGATATTTCTGAGAAATTCGCGCCTTATTTC 538338 Query 88336 CGTCCTGTCTACGACGTGCTAAGCAAACGCTTAGGTGGTCAATTCTTACGC--TACTGTT 88393 || || || || ||| | || ||||| | || | || ||| || || ||| Sbjct 538339 CGCCCGGTTTATGACATTCTGGTTAAACGTCTTGGCG--CATCCTTTATGCAATATTGTC 538396 Query 88394 TAAAGCCGGGAATTGACAAGGTAGAGATTGCTCCCTTCGCCTACATGCGCGGACGTAGCT 88453 | |||| ||||| ||||||||||||||| || |||||||| ||||| || || | | Sbjct 538397 TGCGTCCGGAAATTGCCAAGGTAGAGATTGCACCGTTCGCCTATATGCGTGGTCGCACTT 538456 Query 88454 TTGAAAATGCAGTCATTTTATTAGATGAAGCTCAGAACACTACTGCTCAGCAGATGAAGC 88513 | |||||||| || | | | || || || |||||| || || ||||||||| Sbjct 538457 TCGAAAATGCTGTGGTAATTCTGGACGAGGCGCAGAACGTCACCGCCGCGCAGATGAAAA 538516 Query 88514 TCTTCCTGACACGTATCGGGGAGAACTGTCTC-GTGATTGTCAATGGCGATATTACTCAG 88572 | |||||||| || | || || ||| ||| | || ||||| || ||||||||||| ||| Sbjct 538517 TGTTCCTGACCCGACTGGGCGAAAAC-GTCACGGTCATTGTTAACGGCGATATTACCCAG 538575 Query 88573 TGCGACTTACCGAAAGGGGTACGTTCTGGGCTGGCCGATGCGCTAACGCGTTTTGACACT 88632 |||||||| || ||||| | ||| || || || || ||||| ||||||| || Sbjct 538576 TGCGACTTGCCCGCTGGGGTGCCTTCCGGTCTCGCAGACGCGCTGGCGCGTTTCGAAGAG 538635 Query 88633 GACGACTTAGTTAGCGTTATTCACTTTGTGAAAGACGACTGTGTACGCTCCGAGCTTTGT 88692 ||||| | ||| || || | | ||| | ||||| || ||||| || || | ||| ||| Sbjct 538636 GACGAGATGGTTGGCATTGTACGCTTCGGCAAAGAAGATTGTGTGCGTTCTGCGCTGTGT 538695 Query 88693 CAACG 88697 || || Sbjct 538696 CAGCG 538700 >seq4 Length=447486 Score = 178 bits (196), Expect = 2e-39 Identities = 217/296 (73%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 99468 ATGAAACAATATTTGGAATTAATGAGTAAGGTTTTAAATGAAGGCGTTGTTAAAGGCGAC 99527 |||||||| ||| |||| |||||| | || | | |||||| |||| ||| Sbjct 112239 ATGAAACAGTATCTGGATTTAATGCAACATGTGCTGCACGAAGGCACGCCAAAAGCTGAC 112180 Query 99528 CGTACTGGCACTGGTACGTTGTCTCTGTTTGGGCATCAAATGCGTTTTAATTTGGCTGAA 99587 ||||| ||||| |||||| | || | ||||| || || |||||||| ||| || || Sbjct 112179 CGTACCGGCACCGGTACGCTTTCAATTTTTGGTCACCAGATGCGTTTCAATCTGCAGGAT 112120 Query 99588 GGTTTTCCTCTGGTCACTACTAAGCGCTGTCACCTCCGTTCTATTATTCATGAACTCCTT 99647 |||||||| |||||||| || ||| ||||| |||| || ||||||||||| || || Sbjct 112119 GGTTTTCCGCTGGTCACCACCAAGAAATGTCATATCCGCTCGATTATTCATGAGCTGCTG 112060 Query 99648 TGGTTCCTGAAAGGGGATACCAATACCCAGTACCTGAAAGATAACGGCGTCACTATCTGG 99707 ||||| |||||||| |||||||| | | || || ||||| ||| |||| | |||||| Sbjct 112059 TGGTTTCTGAAAGGCGATACCAACATCGGTTATCTCAAAGAAAACAACGTCTCCATCTGG 112000 Query 99708 AATGAGTGGGAAAACGAGAACGGTGACTTAGGACCGGTATACGGAAAGCAGTGGCG 99763 ||||||||| | ||||| || || | || ||||| || || || |||||||| Sbjct 111999 GATGAGTGGGCGGATGAGAATGGCGATCTCGGCCCGGTGTATGGCAAACAGTGGCG 111944 Score = 114 bits (126), Expect = 2e-20 Identities = 220/322 (68%), Gaps = 2/322 (1%) Strand=Plus/Minus Query 100167 CTGTCCTGTCAACTCTACCAACG-TAGCGCGGACGTGTTCTTAGGTGTGCCGTTCAATAT 100225 || ||||| || ||||| || || | | ||| || | ||| | || ||||||| || || Sbjct 111765 CTCTCCTGCCAGCTCTATCAGCGCTCGTGCG-ACATCTTCCTGGGCCTGCCGTTTAACAT 111707 Query 100226 CGCGTCGTACGCTCTGCTGGTTCACATGTTTGCACAACAAGCCAACATGGCCGTGGGCGA 100285 ||| || || ||||||| || ||| | || || || | | || |||||||| Sbjct 111706 CGCCAGCTATGCGTTGCTGGTACATATGGTGGCGCAGCAGTGCGATCTGCAGGTGGGCGA 111647 Query 100286 CTTCGTCTGGACGGGTGGTGACGTACATCTGTATTCCAACCATCTGGAACAGACACGTAC 100345 |||||||||||| || ||||| || || || ||||||||||| ||| | || Sbjct 111646 CTTCGTCTGGACCGGCGGTGATACCCACCTCTACAGTAACCATCTGGAGCAGGCGCGCCT 111587 Query 100346 TCAGCTAGGACGCACTCCGCGCACATTACCTAAATTGGTTATCAACCGTAAGCCTGACTC 100405 ||||| ||| ||||| | | || | | |||||||| || || || | || Sbjct 111586 GCAGCTGACCCGCGAACCGCGTCCGCTGCCATCACTTGTTATCAAACGCAAACCGGCGTC 111527 Query 100406 TATCTTCGACTATAAGTTTGAAGACTTCGAGATTGAGGACTACGAGCCTTACCCCGCCAT 100465 | || |||||| |||| ||||| || |||||||| | |||||| || | ||||| || Sbjct 111526 GCTGTTTGACTATCAGTTCGAAGATTTTGAGATTGAAGGCTACGATCCGCATCCCGCGAT 111467 Query 100466 TAAAGCGCCGGTGGCGATATGA 100487 ||||| || || || || ||| Sbjct 111466 CAAAGCCCCTGTCGCCATCTGA 111445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 734216742515640