Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_031057.1 Length=180219 Score E Sequences producing significant alignments: (Bits) Value seq1 221 1e-52 seq13 170 2e-37 seq3 168 8e-37 >seq1 Length=970878 Score = 221 bits (244), Expect = 1e-52 Identities = 419/611 (69%), Gaps = 18/611 (3%) Strand=Plus/Minus Query 43399 CCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTCCAGTTGCGTAGTG 43458 || ||||| || ||| |||| || || || || || |||||||| | || || || Sbjct 158670 CCGACGCCAATCATGTCTGGCGTACGCACCCCAACACGTCAGTTCAGCTCCTGTGTGCTG 158611 Query 43459 ATTGAATCAGGTGATTCACTGGGTTCTCTGAATGCTGTAACCTCT---GCGATCGTGAAG 43515 || || | || || |||| || | || || ||||| || || ||||| Sbjct 158610 ATCGAGTGCGGCGACAGCCTGGACTCCATCAACGCC---ACCTCCAGCGCAATTGTGAAA 158554 Query 43516 TATATTTCACAACGCGCGGGTATCGGTGTTAATGCTGGACACATTCGCGCAATGGGTTCT 43575 ||| | || || || || || |||||| | || || || | || || || |||| Sbjct 158553 TATGTCTCTCAGCGTGCCGGCATCGGTATCAACGCCGGTCGTATCCGTGCGCTGGGCAGC 158494 Query 43576 AAAATCCGTGGTGGTGAAGCAGTACATACAGGCGTGATCCCGTTCTGGAAACATATTCAG 43635 || || || |||||||| | ||||| ||| |||||||||| || ||| | ||| Sbjct 158493 CCGATTCGCGGCGGTGAAGCGTTCCATACCGGCTGTATCCCGTTCTACAAGCATTTCCAG 158434 Query 43636 ACAGCGGTTAAATCCTGTTCACAAGGTGGCGTTCGTGGTGGTGCTGCAACGTTGTATTAT 43695 || ||||| || |||||||| || || ||||||||||| || || || ||| ||| || Sbjct 158433 ACCGCGGTGAAGTCCTGTTCTCAGGGCGGCGTTCGTGGCGGCGCAGCCACGCTGTTCTAC 158374 Query 43696 CCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAACAAAGGTGTTGAG 43755 ||||| |||||| ||||| | |||| ||||||||| ||||| |||||| |||||||| Sbjct 158373 CCGATGTGGCATCTGGAAATCGAAAGCCTGCTGGTGCTGAAGAACAACCGTGGTGTTGAA 158314 Query 43756 AATAACCGTATTCGTCACCTGGATTATGGCGTTCAGCTTAACGATTTGATGTATAAGCGT 43815 ||||| | |||||| |||| ||||| || ||||| ||| | |||||||| |||| Sbjct 158313 GGCAACCGCGTGCGTCACATGGACTATGGTGTACAGCTCAACAAGCTGATGTATCAGCGC 158254 Query 43816 TTAATCAATAACGATTACATCACACTGTTCAGCC---CTGACGTTGCAAATGATCGCCTG 43872 | | || ||| | ||||| |||||||||| |||||| ||| | ||||| Sbjct 158253 CTGCTGAAAGGCGAAGATATCACCCTGTTCAGCCCGTCTGACG-TGC-----CTGGCCTG 158200 Query 43873 TATGATGCTTTCTATCAAGCTGATCAGACTGAGTTCGAAGAACTCTATACCAGTTTGGAA 43932 ||||| || |||| || || ||||| |||||| || |||||||||| | || Sbjct 158199 TATGACGCATTCT-TC--GCCAATCAGGATGAGTTTGAGCGCCTCTATACCAAATATGAG 158143 Query 43933 AAAGACCCAACGGTACGCAAGAAACGTATTAAAGCAGCAGATTTGTTCCAGTTGCTTGTT 43992 | || | | | |||||| | ||| ||||||| | ||| | ||| || | | Sbjct 158142 CAGGATCAGAGCATCCGCAAGCAGCGTGTTAAAGCGGTCGATCTCTTCTCACTGATGATG 158083 Query 43993 CAGGAACGCGC 44003 ||||||||||| Sbjct 158082 CAGGAACGCGC 158072 Score = 87.8 bits (96), Expect = 2e-12 Identities = 208/312 (67%), Gaps = 2/312 (1%) Strand=Plus/Minus Query 45163 CAAAAACATCGCGTATTCGAAACTTTGACTGAAAAACAACTGTCATTCTTCTGGCGACCG 45222 |||||| || | | || |||| ||| ||||| || || || ||||||||||| ||| Sbjct 156840 CAAAAATATGACATCTTTGAAAAGCTGATCGAAAAGCAGCTCTCCTTCTTCTGGCGTCCG 156781 Query 45223 GAAGAAGTGGATCTGTCGATCGACCGTATGCAGTATGCAAAAATGCCGGAACACGAGAAA 45282 ||||| || || | || ||| || || | || ||||||| || || ||| Sbjct 156780 GAAGAGGTCGACGTTTCACGCGATCGCATCGATTACCAGGCGCTGCCGGATCATGAAAAA 156721 Query 45283 ATCATTTTTGATTCTAACCTGCAATATCAAACCCTGTTAGATACCATTCAGGGACGTGGC 45342 || ||| |||||| | ||||| || ||| | ||| | |||||||| || || Sbjct 156720 CATATCTTTATCAGCAACCTGAAGTATCAGACGCTGCTGGATTCGATTCAGGGCCGCAGC 156661 Query 45343 CCTAACCTGGCGTTTCTCCCGATTGCCTCTGATGTTTCAA-TGGAAACGTGGATCGAAAC 45401 || ||| | ||| | || ||| | ||| ||| | || ||||||| ||||| ||||| Sbjct 156660 CCGAACGTCGCGCTGCTGCCGCTGATCTC-GATTCCTGAACTGGAAACCTGGATTGAAAC 156602 Query 45402 ATGGGCTTTCAGTGAAACAATTCATAGCCGCAGTTATACACACATTCAGCGTAACTTGCA 45461 ||||| ||| || || ||||| ||| ||| || ||||| |||||| | Sbjct 156601 CTGGGCGTTCTCAGAGACGATTCACTCCCGTTCTTACACCCACATCATCCGTAACATTGT 156542 Query 45462 TATCGACCCGGC 45473 || ||| ||||| Sbjct 156541 TAACGATCCGGC 156530 >seq13 Length=199142 Score = 170 bits (188), Expect = 2e-37 Identities = 145/179 (81%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 53416 GTTGAAGGTGGACAGCACCTAAACGTGAATGTGCTACGTCGCGAAACCCTGGAAGATGCT 53475 ||||||||||||||||| || ||||| || || || || |||||||| ||||||||||| Sbjct 145509 GTTGAAGGTGGACAGCATCTGAACGTCAACGTTCTGCGCCGCGAAACGCTGGAAGATGCA 145450 Query 53476 GTGAAACATCCTGAGAAGTACCCACAGTTAACGATCCGCGTTTCAGGTTATGCAGTTCGC 53535 || ||||||||||| || || || ||| | || |||||||||||||| ||||| || || Sbjct 145449 GTTAAACATCCTGAAAACTATCCGCAGCTGACTATCCGCGTTTCAGGCTATGCCGTGCGT 145390 Query 53536 TTTAATGCACTGACTCCAGAACAACAGCGCGACGTTATCGCCAGAACCTTTACGGAAAG 53594 ||||| |||| || || || || ||||||||||| || || | |||||||| ||||| Sbjct 145389 TTTAACTCACTCACGCCTGAGCAGCAGCGCGACGTGATTACCCGTACCTTTACTGAAAG 145331 >seq3 Length=630259 Score = 168 bits (186), Expect = 8e-37 Identities = 567/870 (65%), Gaps = 12/870 (1%) Strand=Plus/Minus Query 155711 GCCCGTGCATACATTGAGTATCGCCACGATCGCGATATTGCCCGTGAACAGAAAAGCAAA 155770 ||||| || |||||||| || ||||||||||||||| | ||||| || | | ||| | Sbjct 230075 GCCCGCGCCTACATTGAATACCGCCACGATCGCGATGTCGCCCGCGATCGTCAGAGCCAG 230016 Query 155771 CTGTTTACGGATATCTCCAGTATGGTGAATCTGTCCAATAAAGAGATCACCAACGAGAAC 155830 | | | || | | |||| ||| | ||||| | | | |||||||| Sbjct 230015 TTACATCACGCCATTCGCGGACTGGTCGATCAGACCAATGCGGCGCTGCTGAACGAGAAT 229956 Query 155831 GCGAACAAAGAC-GCAAGGGTTTTCCCGACACAGCGCGATCTGTTGGCGGGTATCGTAGC 155889 || ||||||||| |||| | | ||||||| |||||||||||| |||| || ||||| || Sbjct 229955 GCCAACAAAGACAGCAAAG-TGATCCCGACGCAGCGCGATCTGCTGGCCGGGATCGTGGC 229897 Query 155890 GAAACACTTCGCACGTAACCACATTCTACCAAAACACATCGTAGAAGCGCATGATTCTGG 155949 ||||||| ||||| | || || || || | | || ||||| || || Sbjct 229896 AAAACACTACGCACAGCAGCAGATCCTGCCGCGCGATGTGGTGCTGGCGCACGAGCGCGG 229837 Query 155950 TGATATCCATTATCATGATCTGGATTACAGCCCGTTC-ACGCCATACACAAACTGCTGTC 156008 || ||||| ||||| ||||| || ||| ||| ||| | | || | |||||| | Sbjct 229836 CGAGATCCACTATCACGATCTCGACTACTCCCCTTTCTTCCCGATGTTC-AACTGCATGC 229778 Query 156009 TGGTGGATTTGAAAGGTATGCTGGCTAATGGCTTCAAGATGGGTAACGCAGACATCGAAC 156068 || | ||| ||||||| |||||| | || || ||||| ||||| || || || ||||| | Sbjct 229777 TGATCGATCTGAAAGGCATGCTGACCAACGGTTTCAAAATGGGCAATGCTGAGATCGAGC 229718 Query 156069 CCCCGAAATCAATCGGTGTTGCGACTGCTCTTATGGCACAGATCACCGCACAGATTGCTT 156128 | || ||||| |||| || || || | | ||| ||||||| ||| ||| | || Sbjct 229717 CGCCTAAATCGATCGCCACCGCCACCGCCGTGACGGCGCAGATCATCGCGCAGGTCGCCA 229658 Query 156129 CTCACCAGTACGGCGGGACAACCTTTGCAAACG--TGGATAAAGTGCTGGCTCCGTATGC 156186 || |||||||| || ||| || || || | ||| |||||||||| |||| || Sbjct 229657 GCCATATTTACGGCGGCACCACCATT--AACCGTATTGATGAAGTGCTGGCCCCGTTTGT 229600 Query 156187 AGAAATGACATATGAAAAGCATGTTAAGGATGCTAAAAAGTATAAAATTTCGTTAGATCG 156246 || || |||| |||| | | |||| | ||| | || || || || Sbjct 229599 TGAGCAGAGCTATGCCCGGCATCTGGCGATTGCTGAGCAGTGGCAGATCCCG-CAGGCCG 229541 Query 156247 TACA-TATGCGATGGAAAAGACTGAAAAAGATGTG-TTTGATGCTTTCCAATCGTATGAA 156304 || |||||| | || || ||||| ||| | || || || || ||| ||| Sbjct 229540 AGCAGTATGCGCGCCAGCGTACGGAGAAAGA-GTGCTACGACGCCTTTCAGTCGCTGGAA 229482 Query 156305 TACGAAGTTAACACGCTGCATACTGCCAACGGACAAACACCTTTCGTTACTATTACTTTC 156364 || || || || || ||||| || |||||||| || || || || || || || ||| Sbjct 229481 TATGAGGTGAATACCCTGCACACCGCCAACGGCCAGACGCCGTTTGTCACCTTTGGTTTT 229422 Query 156365 GGTACTGGTACGGGAATGTTTGAACGAATGATCCAGAAAGCGATTCTGAAAAACCGTATT 156424 ||| || |||| | | || |||| ||| | |||||||| ||||| | Sbjct 229421 GGTCTGGGGACGGACTGGGCGGCCCGGCTGATTCAGCAGTCGATTCTGCTTAACCGGCTG 229362 Query 156425 CGTGGTCTGGGTAAACAAGGTATTACCCCTGTGTTCCCTAAACTGGTCATGTTTATGGAA 156484 || ||||||||| | | | || | ||||||||||||||||| | || Sbjct 229361 GCCGGACTGGGTAAAAATCGCAAGACGGCGGTGTTCCCTAAACTGGTGTTCAGCATTCGC 229302 Query 156485 AAAGGTGTAAACATGAATCCTGGGGATCGTAACTATGACATCAAACAATTGGCTCTGGAA 156544 |||| || ||| | || || ||| || || ||||||||| |||| ||||| Sbjct 229301 GAAGGCGTCAACCGCCGGGCGGGCGACGTTAATTACGATATCAAACAACTGGCGCTGGAG 229242 Query 156545 TGCGCTTCGAAACGTATGTACCCAGATATC 156574 ||||| || || ||||| || || ||| Sbjct 229241 TGCGCCAGCAAGCGGATGTATCCCGACATC 229212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576526897597960