Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_031085.1 Length=166634 Score E Sequences producing significant alignments: (Bits) Value seq13 197 1e-45 seq2 122 9e-23 seq1 118 1e-21 seq795 82.4 8e-11 >seq13 Length=199142 Score = 197 bits (218), Expect = 1e-45 Identities = 151/179 (84%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 62751 ACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAA 62810 ||| |||||||||||||| | || |||||||||||||| || || || || |||||||| Sbjct 145330 ACTTTCAGTAAAGGTACGGGTAATCACGTCGCGCTGCTGCTCAGGCGTGAGTGAGTTAAA 145389 Query 62811 GCGAACTGCATATCCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAAC 62870 || || ||||| || || || ||||| |||||||||||||| ||||| ||||| ||||| Sbjct 145390 ACGCACGGCATAGCCTGAAACGCGGATAGTCAGCTGCGGATAGTTTTCAGGATGTTTAAC 145449 Query 62871 TGCATCTTCCAGAGTTTCACGACGCAGAACGTTTACGTTCAGGTGTTGACCACCTTCAA 62929 |||||||||||| ||||| || ||||||||||| |||||||| || || |||||||||| Sbjct 145450 TGCATCTTCCAGCGTTTCGCGGCGCAGAACGTTGACGTTCAGATGCTGTCCACCTTCAA 145508 >seq2 Length=722220 Score = 122 bits (134), Expect = 9e-23 Identities = 133/177 (75%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 62754 CTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCG 62813 || ||| ||||| || | || || || ||||||| || |||||| ||||||||||| Sbjct 515055 CTTAGTGAAGGTTCGGGTAATCACATCCTGCTGCTGCTCTTTAGTCAGTGAGTTAAAGCG 515114 Query 62814 AACTGCATATCCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGC 62873 || || || ||||| || || |||||||| ||||||||||| || ||||| | | || Sbjct 515115 CACAGCGTAACCGGAAACGCGAATGGTCAGTTGCGGATATTTCTCTGGATGTTCCATCGC 515174 Query 62874 ATCTTCCAGAGTTTCACGACGCAGAACGTTTACGTTCAGGTGTTGACCACCTTCAAT 62930 ||| ||| ||||||| || |||||| ||||| ||||| ||||| ||||| || Sbjct 515175 ATCCAGCAGCATTTCACGGTTCATAACGTTAACGTTGAGGTGCTGACCGCCTTCGAT 515231 >seq1 Length=970878 Score = 118 bits (130), Expect = 1e-21 Identities = 206/295 (70%), Gaps = 6/295 (2%) Strand=Plus/Plus Query 140479 TTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACACCTTTGTTATTT 140538 || || || |||||||| ||||| ||||| | |||||| |||| ||||| ||| || Sbjct 158273 TTGAGCTGTACACCATAGTCCATGTGACGCACGCGGTTGCCTTCAACACCACGGTTGTTC 158332 Query 140539 TTCAAAACAAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATA-AGCAGTAGCAGC 140597 |||| || || || |||| | ||||| |||||| || || || | ||| || || || Sbjct 158333 TTCAGCACCAGCAGGCTTTCGATTTCCAGATGCCACATCGGGTAGAACAGC-GTGGCTGC 158391 Query 140598 GCCGCCACGAATTCCACCTTGTGAGCATGATTTAACAGCAGTCTGAAAATGTTTCCAAAA 140657 ||||||||||| || || || || || || || || || ||||| ||||| || | || Sbjct 158392 GCCGCCACGAACGCCGCCCTGAGAACAGGACTTCACCGCGGTCTGGAAATGCTTGTAGAA 158451 Query 140658 AGGAATAACACCAGTATG--ACGTACTTCACCCATGCCAATCTTAGAACCTTCGGCACGA 140715 || ||| || ||||| ||| ||||||| || |||| || ||||| Sbjct 158452 CGGGATACAGCCGGTATGGAACG--CTTCACCGCCGCGAATCGGGCTGCCCAGCGCACGG 158509 Query 140716 ATCATACCAACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAATTG 140770 || ||| |||| ||||| || || || || | ||||| ||||| ||||||| Sbjct 158510 ATACGACCGGCGTTGATACCGATGCCGGCACGCTGAGAGACATATTTCACAATTG 158564 Score = 87.8 bits (96), Expect = 2e-12 Identities = 88/112 (79%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 70562 AATTTGGCGGACATGCATGGATTCGAACCATGGACCAATTGATTAACAGTCAACTGCTCT 70621 |||| | || | |||| ||||||||||| |||||||||||||| ||||||||||||| Sbjct 111 AATTGGTGGGTCGTGCA-GGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCT 169 Query 70622 ACC-ACTGAGCTACACATCCAAATTGGTGGGGAGTGATGGAGTCGAACCACC 70672 ||| ||||||||| | || || ||||||| ||| || ||||||| || Sbjct 170 ACCAACTGAGCTAACGACCCGAAGTGGTGGGTGATGACGGGTTCGAACCGCC 221 >seq795 Length=5257 Score = 82.4 bits (90), Expect = 8e-11 Identities = 89/114 (78%), Gaps = 7/114 (6%) Strand=Plus/Minus Query 71040 GCGCTCTACCAAACTGAGCTACACGGAGTAAATTAAATTGGAGCGGATAATGAGAATCGA 71099 |||||||||||| |||||| | | || | || |||||||| | | ||||||| Sbjct 4406 GCGCTCTACCAA-CTGAGCCATATC-AGCACATC----TGGAGCGGGCAGCGGGAATCGA 4353 Query 71100 ACTCACATCATCAGATTGGAAGTCTGAGGTAAT-GCCATTATACGATATCCGCA 71152 || | ||||||||| ||||||| |||||||||| ||||||||||||| ||||| Sbjct 4352 ACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCCATTATACGATGCCCGCA 4299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 533058358512560