Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_031087.1 Length=168272 Score E Sequences producing significant alignments: (Bits) Value seq1 165 9e-36 seq2 161 1e-34 seq13 154 2e-32 >seq1 Length=970878 Score = 165 bits (182), Expect = 9e-36 Identities = 307/448 (69%), Gaps = 2/448 (0%) Strand=Plus/Plus Query 141245 CATCAGGTTATTAATCTGAACGCCATAATCTAAATGACGAATACGGTTTTCATCTACACC 141304 |||||| || || | ||| || ||||| || | ||||| | ||||| | || ||||| Sbjct 158263 CATCAGCTTGTTGAGCTGTACACCATAGTCCATGTGACGCACGCGGTTGCCTTCAACACC 158322 Query 141305 TTTGTTGTTCTTAAGTACGAGGAGGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACAG 141364 ||||||||| || || || ||| |||| | ||||| ||||| || || ||| |||| Sbjct 158323 ACGGTTGTTCTTCAGCACCAGCAGGCTTTCGATTTCCAGATGCCACATCGGGTAGAACAG 158382 Query 141365 TGTCGCCGCGCCACCACGGACTCCACCTTGGGAGCAGGATTTAACTGCTGTTTGGAAGTG 141424 || || ||||| ||||| || || || || || ||||| || || || || ||||| || Sbjct 158383 CGTGGCTGCGCCGCCACGAACGCCGCCCTGAGAACAGGACTTCACCGCGGTCTGGAAATG 158442 Query 141425 TTTCCAGAAAGGAATAACTCCAGTATGTTTGACTTCACCGAATCCAATTTTTGAACCCTC 141484 || |||| || ||| || ||||| |||||||| | ||| ||| Sbjct 158443 CTTGTAGAACGGGATACAGCCGGTATGGAACGCTTCACCGCCGCGAATCGGGCTGCCCAG 158502 Query 141485 GGCGCGAATCATGCCTGCATTAATACCAATACCTGCACGCTTACTGATGTATTTCGTAAT 141544 || || || || || || ||||| || || ||||||| | || |||||| ||| Sbjct 158503 CGCACGGATACGACCGGCGTTGATACCGATGCCGGCACGCTGAGAGACATATTTCACAAT 158562 Query 141545 TGATGCAGCAGCTT-CGTTAATTGAATTAAGACTATCACCACCTTCAATAACCACGCATG 141603 || || | || | |||| || || | || || || || | || || | ||| || | Sbjct 158563 TGC-GCTGGAGGTGGCGTTGATGGAGTCCAGGCTGTCGCCGCACTCGATCAGCACACAGG 158621 Query 141604 AACTGAACTGGCGTGTCGGAGTACGAACACCAGACATAATTGGTGTTGGCAATGAAATCT 141663 | |||||||| ||||| || || || || |||||||| ||||| || |||| || || | Sbjct 158622 AGCTGAACTGACGTGTTGGGGTGCGTACGCCAGACATGATTGGCGTCGGCAGGGAGATTT 158681 Query 141664 TTTTAGTAGAAACTGCATCATAGAAACG 141691 | || || | |||||||||||||| Sbjct 158682 TAAACGTCGAGATCGCATCATAGAAACG 158709 >seq2 Length=722220 Score = 161 bits (178), Expect = 1e-34 Identities = 148/187 (79%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 59989 ATTATAGTGCCTCTGTGAAAGTACGGGCGATAACGTCGCGCTGCTGTTCTGGTGTCAGGG 60048 |||| |||| || ||||| || |||| || || || ||||||| ||| ||||| | Sbjct 515045 ATTACAGTGACTTAGTGAAGGTTCGGGTAATCACATCCTGCTGCTGCTCTTTAGTCAGTG 515104 Query 60049 AGTTAAAGCGCACCGCGTAGCCGGAAACACGAATGGTAAGCTGCGGGTATTTTTCCGGAT 60108 ||||||||||||| ||||| |||||||| |||||||| || ||||| ||||| || |||| Sbjct 515105 AGTTAAAGCGCACAGCGTAACCGGAAACGCGAATGGTCAGTTGCGGATATTTCTCTGGAT 515164 Query 60109 GCTCAACCGCGTCCAGCAGAGTTTCGCGACGCAGCACGTTAACGTTCAGGTGCTGACCGC 60168 | || | ||| |||||||| |||| || || ||||||||||| ||||||||||||| Sbjct 515165 GTTCCATCGCATCCAGCAGCATTTCACGGTTCATAACGTTAACGTTGAGGTGCTGACCGC 515224 Query 60169 CTTCAAT 60175 |||| || Sbjct 515225 CTTCGAT 515231 >seq13 Length=199142 Score = 154 bits (170), Expect = 2e-32 Identities = 139/175 (79%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 60000 TCTGTGAAAGTACGGGCGATAACGTCGCGCTGCTGTTCTGGTGTCAGGGAGTTAAAGCGC 60059 || || || ||||||| || |||||||||||||| || || || || |||||||| ||| Sbjct 145334 TCAGTAAAGGTACGGGTAATCACGTCGCGCTGCTGCTCAGGCGTGAGTGAGTTAAAACGC 145393 Query 60060 ACCGCGTAGCCGGAAACACGAATGGTAAGCTGCGGGTATTTTTCCGGATGCTCAACCGCG 60119 || || ||||| ||||| || || || |||||||| || ||||| ||||| | ||| || Sbjct 145394 ACGGCATAGCCTGAAACGCGGATAGTCAGCTGCGGATAGTTTTCAGGATGTTTAACTGCA 145453 Query 60120 TCCAGCAGAGTTTCGCGACGCAGCACGTTAACGTTCAGGTGCTGACCGCCTTCAA 60174 || ||| |||||||| ||||| ||||| |||||||| ||||| || ||||||| Sbjct 145454 TCTTCCAGCGTTTCGCGGCGCAGAACGTTGACGTTCAGATGCTGTCCACCTTCAA 145508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 538299541215680