Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_031090.1 Length=169621 Score E Sequences producing significant alignments: (Bits) Value seq13 178 1e-39 seq2 120 3e-22 seq1 82.4 8e-11 >seq13 Length=199142 Score = 178 bits (196), Expect = 1e-39 Identities = 145/176 (82%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 142541 GGTGGTCAACACCTGAACGTTAATGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 142600 ||||| || || |||||||| || |||||||| || ||||| ||||||||||||||||| Sbjct 145503 GGTGGACAGCATCTGAACGTCAACGTTCTGCGCCGCGAAACGCTGGAAGATGCAGTTAAA 145444 Query 142601 CATCCAGAAAAATATCCGCAGTTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 142660 ||||| ||||| ||||||||| |||| ||||| || || || ||||| || || |||||| Sbjct 145443 CATCCTGAAAACTATCCGCAGCTGACTATCCGCGTTTCAGGCTATGCCGTGCGTTTTAAC 145384 Query 142661 TCTCTGACTCCGGAACAGCAGCGTGACGTTATCGCTCGTACCTTTACTGAGAGTCT 142716 || || || || || |||||||| ||||| || | |||||||||||||| ||||| Sbjct 145383 TCACTCACGCCTGAGCAGCAGCGCGACGTGATTACCCGTACCTTTACTGAAAGTCT 145328 >seq2 Length=722220 Score = 120 bits (132), Expect = 3e-22 Identities = 129/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 142541 GGTGGTCAACACCTGAACGTTAATGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 142600 || ||||| ||||| |||||||| ||| || ||||||| ||| ||||| | | Sbjct 515225 GGCGGTCAGCACCTCAACGTTAACGTTATGAACCGTGAAATGCTGCTGGATGCGATGGAA 515166 Query 142601 CATCCAGAAAAATATCCGCAGTTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 142660 |||||||| ||||||||||| ||||||| || || |||||||| || || ||||||||| Sbjct 515165 CATCCAGAGAAATATCCGCAACTGACCATTCGCGTTTCCGGTTACGCTGTGCGCTTTAAC 515106 Query 142661 TCTCTGACTCCGGAACAGCAGCGTGACGTTATCGCTCGTACCTTTACTGAG 142711 || |||||| || ||||||| || || || | || ||||| ||| || Sbjct 515105 TCACTGACTAAAGAGCAGCAGCAGGATGTGATTACCCGAACCTTCACTAAG 515055 >seq1 Length=970878 Score = 82.4 bits (90), Expect = 8e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 61936 CATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAAAATCTTGTTCTCAA 61995 ||||| || ||| || |||| || |||||||| || || || || || |||||||| Sbjct 158469 CATACCGGCTGTATCCCGTTCTACAAGCATTTCCAGACCGCGGTGAAGTCCTGTTCTCAG 158410 Query 61996 GGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGCACTTAGAAGTAGAG 62055 || || ||||||| || || || || || || ||||||||||| | ||| | || Sbjct 158409 GGCGGCGTTCGTGGCGGCGCAGCCACGCTGTTCTACCCGATGTGGCATCTGGAAATCGAA 158350 Query 62056 AACCTATTAGTTCTGAAAAATAACAAAGGCGTGGATGAAAACCGTATTCGACATATGGAC 62115 | ||| | || ||||| || ||| || || || | ||||| | || || |||||| Sbjct 158349 AGCCTGCTGGTGCTGAAGAACAACCGTGGTGTTGAAGGCAACCGCGTGCGTCACATGGAC 158290 Query 62116 TACGG 62120 || || Sbjct 158289 TATGG 158285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542615997544440