Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_031095.1 Length=168758 Score E Sequences producing significant alignments: (Bits) Value seq1 167 3e-36 seq2 152 6e-32 seq13 140 4e-28 >seq1 Length=970878 Score = 167 bits (184), Expect = 3e-36 Identities = 305/447 (68%), Gaps = 0/447 (0%) Strand=Plus/Minus Query 136355 CGTTTCTATGATGCAGTTTCTACTAAAAAGATTTCATTGCCAACACCAATTATGTCTGGT 136414 |||||||||||||| | || || || || || |||| || ||||| |||||||| Sbjct 158709 CGTTTCTATGATGCGATCTCGACGTTTAAAATCTCCCTGCCGACGCCAATCATGTCTGGC 158650 Query 136415 GTTCGTACTCCAACCCGCCAGTTCAGTTCATGCGTAGTTATTGAAGGTGGTGATAGTCTT 136474 || || || ||||| || |||||||| || || || | || || | || || || || Sbjct 158649 GTACGCACCCCAACACGTCAGTTCAGCTCCTGTGTGCTGATCGAGTGCGGCGACAGCCTG 158590 Query 136475 AATTCAATTAACGAAGCCGCTGCATCAATTACGAAATACATTAGTAAGCGTGCTGGTATT 136534 | || || |||| || | ||||| |||||| | | ||||||| || || Sbjct 158589 GACTCCATCAACGCCACCTCCAGCGCAATTGTGAAATATGTCTCTCAGCGTGCCGGCATC 158530 Query 136535 GGTATTAATGCGGGGATGATTCGTGCAGAAGGATCAAAAATTGGATTCGGTGAAGTCAAG 136594 ||||| || || || || ||||| || ||| | |||||||| Sbjct 158529 GGTATCAACGCCGGTCGTATCCGTGCGCTGGGCAGCCCGATTCGCGGCGGTGAAGCGTTC 158470 Query 136595 CATACTGGTGTTATTCCTTTCTGGAAACACTTCCAAACCGCAGTTAAGTCATGCTCCCAA 136654 ||||| || ||| || |||| || || ||||| ||||| || ||||| || || || Sbjct 158469 CATACCGGCTGTATCCCGTTCTACAAGCATTTCCAGACCGCGGTGAAGTCCTGTTCTCAG 158410 Query 136655 GGCGGAGTCCGTGGTGGTGCAGCTACACTGTATTATCCGATGTGGCACTTGGAAGTTGAA 136714 ||||| || ||||| || ||||| || |||| || ||||||||||| ||||| | ||| Sbjct 158409 GGCGGCGTTCGTGGCGGCGCAGCCACGCTGTTCTACCCGATGTGGCATCTGGAAATCGAA 158350 Query 136715 AACCTCCTCGTACTTAAGAACAACAAAGGTGTAGATGAAAACCGTATTCGCCATTTAGAT 136774 | ||| || || || ||||||||| ||||| || | ||||| | || || | || Sbjct 158349 AGCCTGCTGGTGCTGAAGAACAACCGTGGTGTTGAAGGCAACCGCGTGCGTCACATGGAC 158290 Query 136775 TATGGTGTTCAGATTAATAACCTGATG 136801 |||||||| ||| | || || |||||| Sbjct 158289 TATGGTGTACAGCTCAACAAGCTGATG 158263 >seq2 Length=722220 Score = 152 bits (168), Expect = 6e-32 Identities = 146/187 (78%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 47302 ATTGAAGGCGGTCAGCACCTGAACGTTAACGTGTTGCGTCGCGAAACCTTGCTGGATGCG 47361 || ||||||||||||||||| ||||||||||| || || |||| ||||||||||| Sbjct 515231 ATCGAAGGCGGTCAGCACCTCAACGTTAACGTTATGAACCGTGAAATGCTGCTGGATGCG 515172 Query 47362 GTTGAGCACCCAGAAAAATACCCGCAGCTGACTATTCGCGTTTCCGGATACGCGGTGCGC 47421 | || || ||||| ||||| ||||| ||||| |||||||||||||| ||||| |||||| Sbjct 515171 ATGGAACATCCAGAGAAATATCCGCAACTGACCATTCGCGTTTCCGGTTACGCTGTGCGC 515112 Query 47422 TTCAACTCCTTGACACCAGAACAGCAGCGCGACGTTATCGCTCGTACTTTCACAGAGGCA 47481 || ||||| |||| ||| ||||||| || || || | || || ||||| || || Sbjct 515111 TTTAACTCACTGACTAAAGAGCAGCAGCAGGATGTGATTACCCGAACCTTCACTAAGTCA 515052 Query 47482 CTATAAT 47488 || |||| Sbjct 515051 CTGTAAT 515045 >seq13 Length=199142 Score = 140 bits (154), Expect = 4e-28 Identities = 136/175 (78%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 47303 TTGAAGGCGGTCAGCACCTGAACGTTAACGTGTTGCGTCGCGAAACCTTGCTGGATGCGG 47362 ||||||| || ||||| |||||||| ||||| |||| |||||||| || ||||| | Sbjct 145508 TTGAAGGTGGACAGCATCTGAACGTCAACGTTCTGCGCCGCGAAACGCTGGAAGATGCAG 145449 Query 47363 TTGAGCACCCAGAAAAATACCCGCAGCTGACTATTCGCGTTTCCGGATACGCGGTGCGCT 47422 || | || || ||||| || |||||||||||||| |||||||| || || || ||||| | Sbjct 145448 TTAAACATCCTGAAAACTATCCGCAGCTGACTATCCGCGTTTCAGGCTATGCCGTGCGTT 145389 Query 47423 TCAACTCCTTGACACCAGAACAGCAGCGCGACGTTATCGCTCGTACTTTCACAGA 47477 | ||||| | || || || |||||||||||||| || | ||||| || || || Sbjct 145388 TTAACTCACTCACGCCTGAGCAGCAGCGCGACGTGATTACCCGTACCTTTACTGA 145334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539854617402320