Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_031107.1 Length=246291 Score E Sequences producing significant alignments: (Bits) Value seq4 212 1e-49 >seq4 Length=447486 Score = 212 bits (234), Expect = 1e-49 Identities = 232/305 (76%), Gaps = 4/305 (1%) Strand=Plus/Minus Query 201791 ATGAAACAATATCTGGACTTACTGCGTGATGTTC-GCGAAAACGGGGATGT-AAAAGCCG 201848 |||||||| |||||||| ||| ||| |||| | || || || | | |||||| | Sbjct 112239 ATGAAACAGTATCTGGATTTAATGCAACATGTGCTGCACGAA--GGCACGCCAAAAGCTG 112182 Query 201849 ACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACAAG 201908 |||||||||| || || || || || |||| || | ||||||||| || || | || | Sbjct 112181 ACCGTACCGGCACCGGTACGCTTTCAATTTTTGGTCACCAGATGCGTTTCAATCTGCAGG 112122 Query 201909 AAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCTGC 201968 | ||||||||||||||||||||||| || ||| | || || || || |||||||||| Sbjct 112121 ATGGTTTTCCGCTGGTCACCACCAAGAAATGTCATATCCGCTCGATTATTCATGAGCTGC 112062 Query 201969 TGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCATCT 202028 ||||||| || | || || ||||||||| ||| | ||||| ||||||||| |||||| Sbjct 112061 TGTGGTTTCTGAAAGGCGATACCAACATCGGTTATCTCAAAGAAAACAACGTCTCCATCT 112002 Query 202029 GGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGCGTA 202088 |||| || ||||||||| | || || || | ||||||||||| || || || ||||| | Sbjct 112001 GGGATGAGTGGGCGGATGAGAATGGCGATCTCGGCCCGGTGTATGGCAAACAGTGGCGCA 111942 Query 202089 GCTGG 202093 ||||| Sbjct 111941 GCTGG 111937 Score = 187 bits (206), Expect = 4e-42 Identities = 237/321 (74%), Gaps = 4/321 (1%) Strand=Plus/Minus Query 202490 CTTTCTTGTCAGCTCTATCAGCG-TAGTGCGGACATGTTCCTTGGCGTACCGTTTAACAT 202548 || || || |||||||||||||| | ||||| |||| ||||| ||| | ||||||||||| Sbjct 111765 CTCTCCTGCCAGCTCTATCAGCGCTCGTGCG-ACATCTTCCTGGGCCTGCCGTTTAACAT 111707 Query 202549 CGCGTCTTACGCCTTGCTGGTACACATGTTTGCACAACAG-GCGAACATGGCGGTAGGCG 202607 ||| || || ||||||||||| ||| | || || ||| |||| | || ||| |||| Sbjct 111706 CGCCAGCTATGCGTTGCTGGTACATATGGTGGCGCAGCAGTGCGATC-TGCAGGTGGGCG 111648 Query 202608 ACTTCGTCTGGACAGGTGGTGATACGCATCTGTACTCCAACCATCTGGAACAAGCTGACC 202667 ||||||||||||| || |||||||| || || ||| ||||||||||| || || || Sbjct 111647 ACTTCGTCTGGACCGGCGGTGATACCCACCTCTACAGTAACCATCTGGAGCAGGCGCGCC 111588 Query 202668 TCCAACTTACCCGTGACCCTAAACCGTTACCGAAGTTGGTTATCAAACGTAAGCCCGATT 202727 | || || ||||| || || ||| | || | ||||||||||| || || | | Sbjct 111587 TGCAGCTGACCCGCGAACCGCGTCCGCTGCCATCACTTGTTATCAAACGCAAACCGGCGT 111528 Query 202728 CCATCTTCGACTACAAATTCGAAGACTTCGAGGTTGTCGATTACATTTCGCATCCGGCGA 202787 | | || ||||| | |||||||| || ||| ||| | ||| | ||||||| |||| Sbjct 111527 CGCTGTTTGACTATCAGTTCGAAGATTTTGAGATTGAAGGCTACGATCCGCATCCCGCGA 111468 Query 202788 TTAAAGCGCCCGTCGCGATCT 202808 | ||||| || ||||| |||| Sbjct 111467 TCAAAGCCCCTGTCGCCATCT 111447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 787940465095240