Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_031127.1 Length=240761 Score E Sequences producing significant alignments: (Bits) Value seq4 232 1e-55 seq1 98.7 2e-15 >seq4 Length=447486 Score = 232 bits (256), Expect = 1e-55 Identities = 231/297 (78%), Gaps = 2/297 (1%) Strand=Plus/Minus Query 196014 ATGAAACAGTATTTGGAATTGATGCACACCGTGTTGAACGAAGGTCACGAGAAA-GCTGA 196072 |||||||||||| |||| || ||||| ||| || ||||||| |||| ||| ||||| Sbjct 112239 ATGAAACAGTATCTGGATTTAATGCAACATGTGCTGCACGAAGG-CACGCCAAAAGCTGA 112181 Query 196073 CCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCGCAA 196132 |||||||||||| || || | || ||||| || | ||||||||||| | |||| | Sbjct 112180 CCGTACCGGCACCGGTACGCTTTCAATTTTTGGTCACCAGATGCGTTTCAATCTGCAGGA 112121 Query 196133 AGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACTGTT 196192 || || ||||||||||||||||| || | || | || || || || || || ||| | Sbjct 112120 TGGTTTTCCGCTGGTCACCACCAAGAAATGTCATATCCGCTCGATTATTCATGAGCTGCT 112061 Query 196193 GTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATCTG 196252 |||||| ||||| ||||| ||||||||| ||||| ||||| ||||||||| ||||| Sbjct 112060 GTGGTTTCTGAAAGGCGATACCAACATCGGTTATCTCAAAGAAAACAACGTCTCCATCTG 112001 Query 196253 GGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGGCG 196309 |||||||||||| ||||| |||||||||| ||||| || || || || |||||||| Sbjct 112000 GGATGAGTGGGCGGATGAGAATGGCGATCTCGGCCCGGTGTATGGCAAACAGTGGCG 111944 Score = 194 bits (214), Expect = 3e-44 Identities = 237/321 (74%), Gaps = 2/321 (1%) Strand=Plus/Minus Query 196748 ACTGTCCTGTCAGCTTTACCAGCGCA-GTGCAGACGTCTTCCTCGGTGTCCCGTTCAACA 196806 ||| ||||| ||||| || |||||| |||| ||| ||||||| || | ||||| |||| Sbjct 111766 ACTCTCCTGCCAGCTCTATCAGCGCTCGTGC-GACATCTTCCTGGGCCTGCCGTTTAACA 111708 Query 196807 TCGCTTCGTACGCTCTGTTGGTTCACATGGTGGCACAGCAGGTCAATATGGTGGCGGGTG 196866 |||| || || || |||| || |||||||| |||||| | || || || ||| | Sbjct 111707 TCGCCAGCTATGCGTTGCTGGTACATATGGTGGCGCAGCAGTGCGATCTGCAGGTGGGCG 111648 Query 196867 ATTTCGTCTGGACGGGCGGCGATACCCATCTGTACTCTAACCATCTGGAACAGGCCACGT 196926 | ||||||||||| ||||| |||||||| || ||| |||||||||||| ||||| Sbjct 111647 ACTTCGTCTGGACCGGCGGTGATACCCACCTCTACAGTAACCATCTGGAGCAGGCGCGCC 111588 Query 196927 TGCAGCTCTCCCGTGTACCGCATGATCTGCCTAAGCTCGTTATCAAACGTAAACCGGATT 196986 ||||||| |||| | ||||| | ||||| || ||||||||||| ||||||| | Sbjct 111587 TGCAGCTGACCCGCGAACCGCGTCCGCTGCCATCACTTGTTATCAAACGCAAACCGGCGT 111528 Query 196987 CCATTTTCGACTATAAGTTCGAAGATTTTGAAATCGTGGGTTACGAAAGCCACCCACCCA 197046 | | || |||||| |||||||||||||||| || | || ||||| || || | | Sbjct 111527 CGCTGTTTGACTATCAGTTCGAAGATTTTGAGATTGAAGGCTACGATCCGCATCCCGCGA 111468 Query 197047 TTAAGGCACCGGTTGCCATCT 197067 | || || || || ||||||| Sbjct 111467 TCAAAGCCCCTGTCGCCATCT 111447 >seq1 Length=970878 Score = 98.7 bits (108), Expect = 2e-15 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 5487 CTCTGTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAGTCC 5546 |||||||||||||| |||||||||| ||||||||||||| |||||| | ||||||||||| Sbjct 378788 CTCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCC 378729 Query 5547 TGCCAGAGTCGCCACATTT 5565 | ||||| |||| |||| Sbjct 378728 AGTCAGAGGAGCCAAATTT 378710 Score = 96.9 bits (106), Expect = 5e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 5487 CTCTGTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAGTCC 5546 |||||||||||||| |||||||||| ||||||||||||| |||||| | ||||||||||| Sbjct 479470 CTCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCC 479411 Query 5547 TGCCAGAGTCGCCACATT 5564 | ||||| |||| ||| Sbjct 479410 AGTCAGAGGAGCCAGATT 479393 Score = 95.1 bits (104), Expect = 2e-14 Identities = 75/90 (83%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 5487 CTCTGTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAGTCC 5546 |||||||||||||| |||||||||| ||||||||||||| |||||| | ||||||||||| Sbjct 403729 CTCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCC 403670 Query 5547 TGCCAGAGTCGCCACATTTTGCATTGCCCG 5576 | ||||| |||| | || | | ||||| Sbjct 403669 AGTCAGAGGAGCCAGAATTAGAAAAGCCCG 403640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 770245873918040