Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_031933.1 Length=114180 Score E Sequences producing significant alignments: (Bits) Value seq13 111 1e-19 seq2 96.9 3e-15 >seq13 Length=199142 Score = 111 bits (122), Expect = 1e-19 Identities = 129/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 28004 AGTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGCGTCAATGCGTTAAATCGAAC 28063 |||||| ||||| |||| |||||| ||| || ||| |||| | || |||||| || || Sbjct 145336 AGTAAAGGTACGGGTAATCACGTCGCGCTGCTGCTCAGGCGTGAGTGAGTTAAAACGCAC 145395 Query 28064 AGCATAGCCAGAGACACGGATGGTCAACTGAGGATATTTTTCAGGATGTTTCTGCGCATC 28123 |||||||| || || ||||| |||| ||| ||||| |||||||||||||| ||||| Sbjct 145396 GGCATAGCCTGAAACGCGGATAGTCAGCTGCGGATAGTTTTCAGGATGTTTAACTGCATC 145455 Query 28124 CAAAAGCTGATCACGGCTTAACACATTGACATTTAGGTGCTGACCACCCTCGAC 28177 ||| || |||| | || ||||| || || ||||| ||||| || || Sbjct 145456 TTCCAGCGTTTCGCGGCGCAGAACGTTGACGTTCAGATGCTGTCCACCTTCAAC 145509 >seq2 Length=722220 Score = 96.9 bits (106), Expect = 3e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 28001 CTGAGTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGCGTCAATGCGTTAAATCG 28060 || ||| || || || |||| || || | ||| || || |||| || |||||| || Sbjct 515055 CTTAGTGAAGGTTCGGGTAATCACATCCTGCTGCTGCTCTTTAGTCAGTGAGTTAAAGCG 515114 Query 28061 AACAGCATAGCCAGAGACACGGATGGTCAACTGAGGATATTTTTCAGGATGTTTCTGCGC 28120 ||||| || || || || || ||||||| || |||||||| || ||||||| | ||| Sbjct 515115 CACAGCGTAACCGGAAACGCGAATGGTCAGTTGCGGATATTTCTCTGGATGTTCCATCGC 515174 Query 28121 ATCCAAAAGCTGATCACGGCTTAACACATTGACATTTAGGTGCTGACCACCCTCGA 28176 ||||| ||| |||||| | | || || || || ||||||||||| || |||| Sbjct 515175 ATCCAGCAGCATTTCACGGTTCATAACGTTAACGTTGAGGTGCTGACCGCCTTCGA 515230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 365222848402869