Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_031946.1 Length=40443 Score E Sequences producing significant alignments: (Bits) Value seq1 352 7e-93 seq3 163 7e-36 >seq1 Length=970878 Score = 352 bits (390), Expect = 7e-93 Identities = 665/973 (68%), Gaps = 4/973 (0%) Strand=Plus/Plus Query 20899 AGGCCGCTGTTTGGTTTCTATGTAAATTCTACCAATATATTCTCCAAGAATACCTATTCC 20958 ||| || | ||||||||| |||||||| | || |||||||| || || | || || || Sbjct 786016 AGGACGATTTTTGGTTTCCATGTAAATGCGGCCGATATATTCACCCAGCACGCCAATCCC 786075 Query 20959 TATCAATTGAACGCCACCCAGGAAAAGAACAGAAACAAGAAGAGACGGGTAGCCAGGAAC 21018 || | ||||||||||| || || || || ||||| |||| ||| |||||||| || || Sbjct 786076 AATAAGCTGAACGCCACCAAGAAACAGCACGGAAACCAGAATAGAGGGGTAGCCTGGCAC 786135 Query 21019 ATTATTTCCAAATATTAATTTATCAATAATCATCCATGCACCGTAAAGGAATGACATACC 21078 || ||||| | || ||||| | |||||||| || || || || | | Sbjct 786136 CGGGTTACCAAACAGCAACTTATCCAGGATCATCCAGAGTCCATATAGAAAAGCTAGCGA 786195 Query 21079 TGCAATAAACAATCCAATGTAAGTCCATATGCGGAGCGGAAATGTTGAGAAAGAAGTTAT 21138 || | | || || | || | ||| ||||| || |||| || ||||| || || | Sbjct 786196 GGCCACCAGAAAACCCAGATATGACCAGATGCGAAGTGGAACCGTAGAGAATGAGGTCAG 786255 Query 21139 TCCCTCCAGCGCCAGGTTCCATAATTTCCAGCCGTTGAATTTCGAATCACCGGCCACGCG 21198 |||||||||||| || ||||| | ||||||||| |||||| | || || | || Sbjct 786256 TCCCTCCAGCGCAAGATTCCACAGCTTCCAGCCGCCGAATTTACTGTGGCCCGCGATCCG 786315 Query 21199 TTCGGCACGGGCATATTTAACAACATCCGTTTTTCCGCCAACCCAACTGAGCACACCCTT 21258 || | ||| |||||| || | ||| || |||||||| |||||||| || | ||||| Sbjct 786316 CTCAGTACGCACATATTCTACGATATCAGTCTTTCCGCCGACCCAACTCAGAATCCCCTT 786375 Query 21259 CATAAACAAGTTGCGTTCTGGCATTTGTTTGATGTTCTCGACAACCGCACGGCTCATTAA 21318 |||||| | || || |||| | || || ||||||||||| |||| ||| | Sbjct 786376 CATAAAGAGATTCTTCTCGGGCAGCAGCTTAATATTCTCGACAACTTCACGCGACATCAG 786435 Query 21319 CCGAAAGTCGCCAACATTTTCTTCGATTTTTGGATTGCTGATTTTATTGTGCAGCTTATA 21378 ||| || || || ||||| ||||| || | |||| |||||| | || ||||| || || Sbjct 786436 CCGGAAATCACCGACATTCTCTTCTATCTGCGGATGGCTGATGCTGTTATGCAGTTTGTA 786495 Query 21379 AAACCACTCAGCTGTCTTACGCTTCATGCGCCCGTCAGTTGAGCGGTCTGAGCGCTTAGC 21438 |||||| || || || || || | | | || || | | ||| ||||| || Sbjct 786496 AAACCAGCGGGCGGTTTTGCGTTTGAGGTGGCCATCGGCACTTCTGTCCATCCGCTTGGC 786555 Query 21439 CAGCACCATATCCGCGCCAGCCTGCCACTTCTCAATGAGATGAGGGATAACTTCTATCGG 21498 || || ||||| || || ||| ||||||| | || | | ||||||||| || || Sbjct 786556 AAGAACAATATCAGCACCCGCCAGCCACTTGTTGATCATCTCAGGGATAACAGTGATGGG 786615 Query 21499 ATCCTGTAAATCGACATCAATAGGAATGACCGCATCCCCGGTTGCATGGTCGAGACCCGC 21558 ||||||||||| |||||||| || || || ||||| |||||||| || || || || Sbjct 786616 GTCCTGTAAATCCACATCAATCGGGATAACGGCATCGCCGGTTGCGGCTTCCAGGCCGGC 786675 Query 21559 GAAAAGAGCAGGTTCTTTACCGAAGTTTCGCGTAAACGAAAGCGGAATAACGAGCGGATC 21618 || || || ||||| || ||||| || || ||||||| || || || |||||||| Sbjct 786676 AAACAGCGCGGGTTCCTTGCCGAAATTACGAATAAACGACAGGCTAAGTACCAGCGGATC 786735 Query 21619 AGATGCAGCT-ATTTTGTTAATTATTGATTCAGTCGCATCTTTACTACCATCATTAATAA 21677 | | || | || | |||| | | | || |||||| | || ||||||| || || Sbjct 786736 -GCTCTGACTCAGTTGGGTAATCAGCGCATGCGTTGCATCTGTGCTGCCATCATCAACAA 786794 Query 21678 AAACGATCTCAATTTCATATTCTTTTAGCTCATTAAACTCACGTACCGTTTTATAGAAAA 21737 |||| ||||||| | | || ||| | | | | | | |||| | ||| |||| Sbjct 786795 AAACAATCTCAACCTGCCAGGCTGCCAGCGCTTCATATTTTCTGACCGCGTCATAAAAAA 786854 Query 21738 TCGGTATCGTGTCTTCTTCGTTAAAAACTGGAACGACAAGAGAGATTTTCATCTTATATC 21797 || || || ||||| ||||| || || || || |||||||||||||| | | || Sbjct 786855 GAGGGATGACCTCCTCTTCATTAAATACCGGTACCACCAGAGAGATTTTCAT-TATTCTC 786913 Query 21798 CCTGAAA-ACAATGAATCTGGAATAGATAAAGCCGCATACCAGGCTAATTGCCGAGAAAG 21856 | | ||| || || || | |||| | | |||||| || |||| || || ||||| | | Sbjct 786914 CTTTAAATACGATAAAGCGGGAAAAAAGAAAGCCACACGCCAGACTGATAGCCGATGAGG 786973 Query 21857 TGATAAGGGTAAT 21869 |||| || ||||| Sbjct 786974 TGATCAGCGTAAT 786986 >seq3 Length=630259 Score = 163 bits (180), Expect = 7e-36 Identities = 202/276 (73%), Gaps = 3/276 (1%) Strand=Plus/Minus Query 26621 CATTGCCTCCTTGCTT---GCCACCAAGCATTTGCATGGTTCCACCAACGCCAACGATGA 26677 |||| || || |||| |||||| ||||| |||||||| ||||||||| ||| | || Sbjct 51173 CATTACCGCCCTGCTGACGGCCACCCAGCATCTGCATGGTACCACCAACGTTAACCACGA 51114 Query 26678 CTTCGGTAGTGAACCGATCCTGTCTGCTTTGATCCTGCCATTTTCTTGTCCGCAATTTGC 26737 ||||||| ||| | || ||||| | | |||||||||||||| | || |||| | || Sbjct 51113 CTTCGGTGGTGTAACGCTCCTGGCCACCCTGATCCTGCCATTTACGGGTGCGCAGCTGGC 51054 Query 26738 CTTCAAGATAAACCTCAGAACCTTTTCGCAGATACTCGCTGGCAATTTCTGCCAGTTTCC 26797 |||| | ||| |||| || |||||| ||| || || | || | ||| |||||||| | Sbjct 51053 CTTCGATATAGACCTGCGATCCTTTTTTCAGGTATTCACCCGCGACTTCAGCCAGTTTGC 50994 Query 26798 CGCTCATTACCACACGGTGCCACTCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCAC 26857 | || ||||||||||||||||| || ||| || | || || || ||||| || | Sbjct 50993 CAAACAGCACCACACGGTGCCACTCAGTGATCTCTTTGTTTTCACCGGTCTGCTTGTCGC 50934 Query 26858 GCCATTGTTCTGACGTAGCAACTGTAAGGTTTGCAA 26893 |||| ||| |||||||| | |||| ||| |||| Sbjct 50933 GCCAGCTTTCCGACGTAGCCAGCGTAATGTTGGCAA 50898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129286221101090