Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010705.1_202016-07-08] 5,029 sequences; 28,124,222 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1 105 1e-17 >seq1 Length=262052 Score = 105 bits (116), Expect = 1e-17 Identities = 450/702 (64%), Gaps = 12/702 (2%) Strand=Plus/Plus Query 79863 GAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCA 79922 |||||| || || | || |||| || || || |||| | || || | | | ||| Sbjct 258086 GAACTCCTCGCCATAGACTTCGTGTAGGCCGGGGGCTTCGGCGGGGCAGAAGAGAGGCCA 258145 Query 79923 CTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAG 79982 || || | ||| || || | ||| || ||||| |||||||| || || | || || Sbjct 258146 ATCGCCGGCGGCCTCGACACGCTCCATGAAAAGATCGGGAATCCAGAGCGCAAAGAAGAG 258205 Query 79983 ATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAAT 80042 ||| | | | | ||||| || || ||||| ||| || ||||| | | | Sbjct 258206 ATCACGAGCGCGAACTTCCTCCTTGCCGTGGTTCTTGCGAAGGTCCAGGAATTCGAAGAC 258265 Query 80043 ATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTG 80102 || | |||||||| || | ||| || || | |||| || || ||||| || || || Sbjct 258266 GTCGGCGTGCCACGGCTCGAGGTAGATCGCGAAGGCTCCGGGACGCTTGTTGCCACCTTG 258325 Query 80103 ATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGT 80162 || | ||| | |||||||| || || || | | ||| || | ||| || || || || Sbjct 258326 GTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGGACAATGCCGTTCGA-GT 258384 Query 80163 A-CCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTA 80221 | || || || |||| ||| ||| || | || || || || || | ||| | Sbjct 258385 AGCCGTTCGTGCCGGCGATGTAGGAGCCGGTCGCGCGGATGTTGTGGATGCTCAAACCGA 258444 Query 80222 TTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGTATCATAGATGCCCTCT 80280 | || || || | || ||||| | ||||| ||| |||| ||| || || ||||| || Sbjct 258445 TACCACCGGCGGTCTTGGAGATGAGCGCGCA-CGTCTTAAGCGTGTCGTAAATGCCTTCA 258503 Query 80281 ATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCC 80340 || |||||| |||| | | || |||||| || | || | || ||||| Sbjct 258504 ATCGAATCATCCTTCATCGTGACCAGGAAACAGGACGAAAGCTGCGGGTGAGGCGTTCCG 258563 Query 80341 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTC 80400 || || || | || || || ||||| ||||| | || |||| || ||||||| | Sbjct 258564 GCGTTGAAGAGCGTCGGCGAGGCGTGGGTAAAGTAGCGCTCGGACATAAGGTTGTACGAC 258623 Query 80401 T-CAATAGCTGATTCTATATCCCATTGA---TGAATTCCTACCGCGACACGCATTAACAT 80456 | ||| | | | | || || ||| || || || || ||||||||||| | ||| Sbjct 258624 TGCAAGACGCGCT-CAATGTCG---TGACCGTGGATGCCGACGGCGACACGCATGAGCAT 258679 Query 80457 GTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGT 80516 ||| || || | ||| ||| |||| | || | |||||| || ||| | || Sbjct 258680 GTGTTGCGGGCGTTCGGCGACCTTGCCGTCGATGCGAAGCAAGTAGGAGCGTTCGAGCGT 258739 Query 80517 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAAT 80558 ||| || ||||| |||||||| || || || ||||| || Sbjct 258740 TTTGAAGCCAAAGTAGTTGTAGCCGAAATCGCGGTCGTAGAT 258781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718223647827560