Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010705.1_202016-07-08] 5,029 sequences; 28,124,222 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq154 87.8 1e-12 seq68 86.0 5e-12 >seq154 Length=48613 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || ||||||||||| |||||||||||||||| ||| | | ||| Sbjct 44756 AGGACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCATCC 44697 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | || ||||| ||| | || || || || ||||| || | ||| || ||||| Sbjct 44696 TCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCT 44637 Query 16843 GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902 | | ||| | ||| || | | | | |||||| | ||| || | ||||||||| Sbjct 44636 TGGATCTTGGT-CTTGACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATGGT 44578 Query 16903 TTTTCCGGTCAGCGTTTTGACAAAAATCTGCA 16934 || || || || || |||||||| || |||| Sbjct 44577 CTTGCCCGTGAGGGTCTTGACAAAGATTTGCA 44546 >seq68 Length=86121 Score = 86.0 bits (94), Expect = 5e-12 Identities = 156/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | || |||| || || || ||||||||||| ||||||||||||||| Sbjct 30795 CCACCTCGGAGGCGGAGGACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCC 30854 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||| | || ||||| ||| | || || || || ||||| || Sbjct 30855 AAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGGG 30914 Query 16829 ACGCCCTCTTTGTC-GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | ||| || ||||| | | ||| | ||| || | | | | |||||| | ||| Sbjct 30915 ATGCCTTCCTTGTCTTGGATCTTGGT-CTTGACGTTGTCGATCGTGTCGGACGACTCGAC 30973 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGC 16933 || | |||||| || || || || || || |||||||| || ||| Sbjct 30974 CTCGAGGGTGATCGTCTTGCCCGTAAGAGTCTTGACAAAGATTTGC 31019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405063171776710