Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010705.1_202016-07-08] 5,029 sequences; 28,124,222 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq10 156 4e-33 seq3228 152 5e-32 seq95 138 1e-27 seq4821 93.3 4e-14 seq15 87.8 2e-12 >seq10 Length=176449 Score = 156 bits (172), Expect = 4e-33 Identities = 178/235 (76%), Gaps = 3/235 (1%) Strand=Plus/Plus Query 126880 TACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTA 126939 ||||| ||| || || | || | |||||| || | ||| ||||| || || |||||||| Sbjct 13541 TACTG-TCCGCCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTA 13599 Query 126940 ATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATC 126999 |||| | | |||||| ||| || ||||| || ||||| |||||||||||||||| || Sbjct 13600 ATCGGCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTC 13659 Query 127000 GGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTAC 127058 ||||| |||||||||||||| ||| || ||||| |||| |||| ||||||| Sbjct 13660 TGGAGGAATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTG-TCGATCGTGTCCGAGG 13718 Query 127059 TCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||||| |||| || | ||| ||||||||||| || || || || || ||||| Sbjct 13719 ACTCGACCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 13773 Score = 152 bits (168), Expect = 5e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | ||| ||||| || || |||||||||||| | Sbjct 13775 CCACCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAATCGGCG 13834 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || ||||| || |||||| |||||||||||||||| || ||||| Sbjct 13835 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGAGGA 13894 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| || || ||||| | |||| || |||| |||||| Sbjct 13895 ATGCCCTCCTTGTCCTGAATCTTAGCCTTGACATTGTCGATCGTATCCGACGACTCGACC 13954 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | ||| ||||||||||| || || || || || ||||| Sbjct 13955 TCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 14001 Score = 152 bits (168), Expect = 5e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | ||| ||||| || || |||||||||||| | Sbjct 14003 CCACCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAATCGGCG 14062 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || ||||| || ||||| |||||||||||||||| || ||||| Sbjct 14063 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGAGGA 14122 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 |||||||||||||| ||| || ||||| |||| |||| ||||||| |||||| Sbjct 14123 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTG-TCGATCGTGTCCGAGGACTCGAC 14181 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | ||| ||||| ||||| || || || || || ||||| Sbjct 14182 CTCGAGCGTAATCGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 14229 Score = 152 bits (168), Expect = 5e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | ||| ||||| || || |||||||||||| | Sbjct 14231 CCACCTCGGAGACGGAGAACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAATCGGCG 14290 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || ||||| || ||||| |||||||||||||||| || ||||| Sbjct 14291 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGAGGA 14350 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 |||||||||||||| ||| || ||||| |||| |||| ||||||| |||||| Sbjct 14351 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTG-TCGATCGTGTCCGAGGACTCGAC 14409 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | ||| ||||||||||| || || || || || ||||| Sbjct 14410 CTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 14457 >seq3228 Length=310 Score = 152 bits (168), Expect = 5e-32 Identities = 162/211 (77%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 |||||| || | ||| ||||| || || |||||||||||| | | |||||| ||| || Sbjct 303 CACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAATCGGCGAGCGTGCGGCCATCCTC 244 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||| || ||||| |||||||||||||||| || ||||| |||||||||||||| Sbjct 243 GAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTG 184 Query 127024 GATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTT 127082 ||| || ||||| ||||| ||| ||||||| |||||| |||| || | ||| | Sbjct 183 GATCTTGGCCTTGACGTTGT-CGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCT 125 Query 127083 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||||||||| || || || || || ||||| Sbjct 124 TGCCGGTCAGGGTCTTGACGAAGATTTGCAT 94 >seq95 Length=70211 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| |||||| || | ||| ||||| || || || |||||||| | Sbjct 442 CCACCACGGAGACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCCGCG 383 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| || ||| || ||||| || || ||| |||||||||||||||| || || || Sbjct 382 AGCGTACGGCCATCCTCGAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCTGGGGGA 323 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| ||||||||| || || ||||| |||| |||| ||||||| |||||| Sbjct 322 ATGCCTTCCTTGTCCTGAATCTTGGTCTTGACGTTG-TCGATCGTGTCCGACGACTCGAC 264 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | ||| ||||| || || || || ||||| |||||||| Sbjct 263 CTCGAGCGTGATCGTCTTGCCCGTAAGCGTCTTGACAAAGATCTGCAT 216 Score = 120 bits (132), Expect = 3e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| |||||| || | ||| ||||| || || || ||||||||| | Sbjct 214 CCACCACGGAGACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGCG 155 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || ||||| || |||||| |||| | || || || || || || Sbjct 154 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGGTCTGGGGGA 95 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||| ||| ||| || ||||| |||| |||| ||||||| |||||| Sbjct 94 ATGCCCTCCTTATCCTGGATCTTGGTCTTGACGTTG-TCGATCGTGTCCGAGGACTCGAC 36 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTT 127098 |||| || | ||| ||||| ||||| || || Sbjct 35 CTCGAGCGTGATCGTCTTGCCCGTCAGCGTCTT 3 >seq4821 Length=205 Score = 93.3 bits (102), Expect = 4e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| |||||| || | ||| ||||| || || |||||||||||| | Sbjct 97 CCACCACGGAGACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATATTGTAATCGGCG 156 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCT 126995 | |||||| ||| || ||||| || |||||| ||||||||||||||| Sbjct 157 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCT 205 >seq15 Length=154199 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 47439 TACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCC-AAGATTTACCA 47497 |||||||| || ||||||||||| || | || | || | | ||| ||| | | | Sbjct 92169 TACATCGAGTTCGTCGCCGACCGATTGTTGGT-CGCCTTGGGCAACCCCAAGGTCTGGAA 92111 Query 47498 CACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTT 47557 | ||||||| || || || |||||||| | || ||||||||||||||||| ||||| || Sbjct 92110 CGCCGAGAACCCCTTTGACTTTATGAATATGATCTCGCTCGAGGGCAAGACAAACTTCTT 92051 Query 47558 CGAGAAGCGCGT 47569 ||||||||| || Sbjct 92050 CGAGAAGCGTGT 92039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475470908830960