Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010705.1_202016-07-08] 5,029 sequences; 28,124,222 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1 158 1e-33 seq195 134 2e-26 seq178 113 5e-20 seq163 82.4 9e-11 >seq1 Length=262052 Score = 158 bits (174), Expect = 1e-33 Identities = 557/862 (65%), Gaps = 16/862 (2%) Strand=Plus/Plus Query 106463 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 106522 ||||| || ||||| ||||| || || ||| ||| | | |||||| | || || Sbjct 257838 GCGATCGAGGCCAAGTTGCAGACGGCGCACTCGTCCGGCGCCGAGTACTCGATGATCTCG 257897 Query 106523 GTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCAC 106582 || |||| ||| || ||| ||||| || | |||||||||||| || ||||| Sbjct 257898 GTGCACAGGTTCGACGACTTGATCGTGCCAAGATTCTTTTGGTTCGATTTCTTGTTCGCG 257957 Query 106583 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTC 106642 || || ||||||||||| | || | || || || ||| | | ||||| || | | Sbjct 257958 GCGTCTTTGTAGAGCATAAAAGGGTTGCCAGTTTCGACCTGGGCTTCAAGAATCGCGTAC 258017 Query 106643 CACA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTA 106701 || | | | ||| || | | | ||||| || |||||| ||||| || | | Sbjct 258018 CAAAGCTTTTGCGCGGGGATCGTTTTC-TTGGCGCGGCCCTCCTTTTCGTATTTCTCGAA 258076 Query 106702 GAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAA 106761 | ||| |||||||| || | ||| || || || || | | | || ||||| Sbjct 258077 CAAGGCGCGGAACTCCTCGCCATAGACTTCGTGTAGGCCGGGGGCTTCGGCGGGGCAGAA 258136 Query 106762 AAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGA 106821 |||| ||| | || | |||| || |||| ||||||||| || |||||||| || | Sbjct 258137 GAGAGGCCAATCGCCGGCGGCCTCGACACGCTCCATGAAAAGATCGGGAATCCAGAGCGC 258196 Query 106822 TGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAA 106881 | |||||||| | | ||| | || || | || ||||| || | || ||||| Sbjct 258197 AAAGAAGAGATCACGAGCGCGAACTTCCTCCTTGCCGTGGTTCTTGCGAAGGTCCAGGAA 258256 Query 106882 CTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC-- 106939 || | || || |||||||| ||||| || |||| |||| | ||| ||||| Sbjct 258257 TTCGAAGACGTCGGCGTGCCACGGCTCGAGGTAGATCGCGAAGGCTCCGG---GACGCTT 258313 Query 106940 ----CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAAT 106995 ||| |||| | || |||||||| ||| ||| | || || ||||| || | ||| Sbjct 258314 GTTGCCACCTTGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGGACAAT 258373 Query 106996 ACCATCTGATTGACCATTTGTCCCC-CGAA-TACGAGATTTATTGGCTCTCACATCATGG 107053 || | || | || || || || ||| || ||| | || | | | ||| Sbjct 258374 GCCGTTCGAGTAGCCGTTCGTGCCGGCGATGTAGGAGCCGG--TCGCGCGGATGTTGTGG 258431 Query 107054 ATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCA 107113 ||| || || ||||| || || ||| ||||| |||| ||| | |||| || | Sbjct 258432 ATGCTCAAACCGATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTAAGCGTGTCG 258491 Query 107114 TAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGT 107173 || || || | || || || ||||| | | || ||||| || || | |||||| Sbjct 258492 TAAATGCCTTCAATCGAATCATCCTTCATCGTGACCAGGAAACAGGACGAAAGCTGCGGG 258551 Query 107174 CTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATC 107233 || || || || |||||||| || || | ||||| | || | | |||||| Sbjct 258552 TGAGGCGTTCCGGCGTTGAAGAGCGTCGGCGAGGCGTGGGTAAAGTAGCGCTCGGACATA 258611 Query 107234 TTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGC 107293 || ||| | || |||||| |||||||| | ||||||||||||| ||| |||||| Sbjct 258612 AGGTTGTACGACTGCAAGACGCGCTCAATGTCGTGACCGTGGATGCCGACGGCGACACGC 258671 Query 107294 ATAAACATGTATTG-GGGTGTT 107314 || | ||||| ||| ||| ||| Sbjct 258672 ATGAGCATGTGTTGCGGGCGTT 258693 >seq195 Length=38400 Score = 134 bits (148), Expect = 2e-26 Identities = 281/416 (68%), Gaps = 2/416 (0%) Strand=Plus/Minus Query 6899 CCGCATCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAA 6958 |||| |||| |||||||| | || ||| ||| || ||||| ||| | || ||| Sbjct 26063 CCGCTTCTACCAAGCCTCGACTTCCGAGTTGTACGGCAAGGTCGTCGAGACCCCTCAATC 26004 Query 6959 CGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTG 7018 ||| ||| ||||||||||| || ||| ||||||||| | ||| | || | || Sbjct 26003 TGAGACGACGCCCTTCTACCCTCGTTCGCCTTACGGAGTCGCCAAGTTGTACGCCTACTG 25944 Query 7019 GCTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAA 7078 | ||||||| || ||||||||| | ||||| ||| |||||| ||| ||| | ||||| Sbjct 25943 GATCGTCAAGAACTACCGCGAGGCGTACGGCATGTACGCGTGCAACGGTATCTTGTTCAA 25884 Query 7079 CCATGAATCACCGAGACGAGGT-GCAGACTTTGTCACAAAGAAGATTACCGAGGGTATCA 7137 ||| || || ||| | || ||| ||| ||||||||| | ||||||| || | | || Sbjct 25883 CCACGAGTCCCCGCGTCGTGGTCGCA-CCTTTGTCACGAGGAAGATTTCCCGAGCTGTCG 25825 Query 7138 AACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAG 7197 | ||| | ||| || |||| | | | | | || || || | || || | | Sbjct 25824 CCGAGATCTCGCTCGGTCAACAGGACTGCCTCTACCTCGGCAATATGGAGGCCAAGCGTG 25765 Query 7198 ATTGGGGTCACGCGAAGGACTATGTTGAAGCCATGTGGCTCATGCTTCAACAAGAGGAAG 7257 ||||||| ||||| ||||| || || | |||||| ||| | || || | Sbjct 25764 ATTGGGGACACGCCGCCGACTACGTCGAGGGTATGTGGAGGATGATGCAGGAACCCACCG 25705 Query 7258 CCGACGAATATGTAGTAGCAACGGGTGAGACCCATTCAGTGAGGCGGTTCATTGAG 7313 ||||||| | ||| | || |||||||||||||| | || | | |||||| ||| Sbjct 25704 CCGACGACTTTGTCCTCGCGACGGGTGAGACCCACCCCGTCAAGGAGTTCATCGAG 25649 >seq178 Length=42423 Score = 113 bits (124), Expect = 5e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 6899 CCGCATCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAA 6958 |||| |||| || ||||| |||| ||| ||| || |||||| ||| | || || Sbjct 36947 CCGCTTCTACCAGGCCTCGACCTCGGAGTTGTACGGCAAGGTTGTCGAGACCCCTCAGTC 36888 Query 6959 CGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTG 7018 |||| ||| ||||||||||| || ||| |||||||||| | ||| | || || Sbjct 36887 CGAGACGACCCCCTTCTACCCTCGTTCGCCCTACGGAGTCGCCAAGTTGTACGCCTTCTG 36828 Query 7019 GCTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAA 7078 | ||||||| || ||||||||||| |||| ||| |||||| ||| ||||||||||| Sbjct 36827 GATCGTCAAGAACTACCGCGAGTCGTACGACATGTACGCGTGCAACGGTATCCTCTTCAA 36768 Query 7079 CCATGAATCACC 7090 ||| || || || Sbjct 36767 CCACGAGTCCCC 36756 >seq163 Length=46224 Score = 82.4 bits (90), Expect = 9e-11 Identities = 227/341 (67%), Gaps = 14/341 (4%) Strand=Plus/Plus Query 169178 GATGAGACCCTTGATGTGAGAACCATCATTATCGGCATCTGTCATAATCATAAGACGACC 169237 ||| |||||||| ||||| || ||||| | ||| ||| | ||| ||||| || || Sbjct 12324 GATCAGACCCTTAATGTGCGATCCATCGTGATCTTGATCGGCCATGATCATGAGCTTGCC 12383 Query 169238 ATAGCGAAGTTCAGAAACATCTTGGTAGTCTTTTCCTTGTTGAAGACCCAAGATCTTCTT 169297 || || || || || ||| |||| || || || ||||||||||||| ||| Sbjct 12384 GTAACGGAGCGAGTCGACGTCGGTGTAAACTTTGCCCTGCTGCAGACCCAAGATCTGCTT 12443 Query 169298 GAGATCG-TTGAACTCTTGG----TTTGATGTGAGCTGTGCCACTGAAGCGTCGCGGACA 169352 ||||| ||||| ||| || | || | | ||| ||| | | || || || || Sbjct 12444 --GATCGCTTGAA-TCTCGGCATTGTCGAGGAGGGCTTTGC--CCGCCGCTTCACGCACG 12498 Query 169353 TTCTTACACTTCCCACGGAGAGGAAAGACGCCATAGTGATCACGTCCAACGACGGAGAGA 169412 || |||| || || | ||| || || ||||||| || || || ||||| | ||| Sbjct 12499 TTGAGCAACTTTCCTCGCAAAGGGAAAACACCATAGTTGTCTCGACCGACGACAGCCAGA 12558 Query 169413 CCCGCGACCGCAAGGGTTTTCGCTGAATCACCCTCCGTGACAATGAGGGTACACTT--TC 169470 |||| ||| || || | || || ||||| || || || | ||||| || ||||| | Sbjct 12559 CCCGAGACGGCGAGCGCCTTGGCGGAATCTCCTTCGGTCAAGATGAGCGTGCACTTGGAC 12618 Query 169471 CAGATTGCGCCGTACCCGCCTTGTTTGCGTCGTCCAACTTG 169511 | | | | |||||| || ||||| || || || | |||| Sbjct 12619 CCG--TTCCTCGTACCAGCGTTGTTCGCATCTTCGAGCTTG 12657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589943712331960