Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010705.1_202016-07-08] 5,029 sequences; 28,124,222 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1 178 2e-39 seq195 134 2e-26 seq178 105 8e-18 >seq1 Length=262052 Score = 178 bits (196), Expect = 2e-39 Identities = 558/858 (65%), Gaps = 15/858 (2%) Strand=Plus/Minus Query 75211 CCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGT 75270 ||| || ||||| ||||||| ||||| ||||||||||||| | |||||||| || Sbjct 258689 CCCGCAACACATGCTCATGCGTGTCGCCGTCGGCATCCACGGTCACGACATTGAGCGCGT 258630 Query 75271 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 |||| || | ||| || |||||| | | || | ||||| | || || ||||| Sbjct 258629 CTTGCAGTCGTACAACCTTATGTCCGAGCGCTACTTTACCCACGCCTCGCCGACGCTCTT 258570 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 ||| || || || || |||||| | || || ||||| || | | ||||| || Sbjct 258569 CAACGCCGGAACGCCTCACCCGCAGCTTTCGTCCTGTTTCCTGGTCACGATGAAGGATGA 258510 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450 || || | || || || | || |||| | ||| |||| ||||| ||| || || Sbjct 258509 TTCGATTGAAGGCATTTACGACACGCTTAAGACGTGCGCGCTCATCTCCAAGACCGCCGG 258450 Query 75451 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGGGGG-ACA 75508 ||||| || || |||||| | | | || | ||| || ||| || || Sbjct 258449 TGGTATCGGTTTGAGCATCCACAACATCCGCGCGACCGG--CTCCTACATCGCCGGCACG 258392 Query 75509 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 75568 || || | || | || ||| | || ||||| || || | ||| ||| |||||||| Sbjct 258391 AACGGCTACTCGAACGGCATTGTCCCCATGCTCCGTGTCTACAACAACACCGCGCGCTAC 258332 Query 75569 GTAAATCAAGCGGG------GCGTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGG 75622 || | |||| || ||||| | || || ||||| ||||| | || || ||| Sbjct 258331 GTCGACCAAGGTGGCAACAAGCGTCCC---GGAGCCTTCGCGATCTACCTCGAGCCGTGG 258275 Query 75623 CATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGG 75682 || ||||| || | || ||||| || | || ||||| || | || || | ||| Sbjct 258274 CACGCCGACGTCTTCGAATTCCTGGACCTTCGCAAGAACCACGGCAAGGAGGAAGTTCGC 258215 Query 75683 TGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAG 75742 | | |||||||| | | || |||||||| || ||||||||| |||| || |||| Sbjct 258214 GCTCGTGATCTCTTCTTTGCGCTCTGGATTCCCGATCTTTTCATGGAGCGTGTCGAGGCC 258155 Query 75743 GGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGT 75802 | || | ||| |||| ||||| || | | | || || || || ||| | || Sbjct 258154 GCCGGCGATTGGCCTCTCTTCTGCCCCGCCGAAGCCCCCGGCCTACACGAAGTCTATGGC 258095 Query 75803 GAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTA 75862 |||||||| ||| | | | || || ||| ||||||| | ||||| || | Sbjct 258094 GAGGAGTTCCGCGCCTTGTTCGAGAAATACGAAAAGGAGGGCCGCGCCAAGAAAACGATC 258035 Query 75863 CCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATA 75921 || || || | | ||||| | || ||||| || | ||| || ||||| | || | Sbjct 258034 CCCGC-GCAAAAGCTTTGGTACGCGATTCTTGAAGCCCAGGTCGAAACTGGCAACCCTTT 257976 Query 75922 TATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAA 75981 |||||| ||||| || || |||||||| |||||||||||| | || || ||||| Sbjct 257975 TATGCTCTACAAAGACGCCGCGAACAAGAAATCGAACCAAAAGAATCTTGGCACGATCAA 257916 Query 75982 GAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTG 76041 | || || || ||||| || || | |||||| | | ||| ||| || || || Sbjct 257915 GTCGTCGAACCTGTGCACCGAGATCATCGAGTACTCGGCGCCGGACGAGTGCGCCGTCTG 257856 Query 76042 CAATTTGGCATCAATCGC 76059 ||| ||||| || ||||| Sbjct 257855 CAACTTGGCCTCGATCGC 257838 >seq195 Length=38400 Score = 134 bits (148), Expect = 2e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177747 AATCTTCTTTGTGACAAAGTCGGCACCTCGTCTCGGTGATTCGTGGTTGAAGAGGATTCC 177806 ||||||| | ||||||||| | ||| || | ||| || ||||||||||| | ||| || Sbjct 25838 AATCTTCCTCGTGACAAAGGTGCGACCACGACGCGGGGACTCGTGGTTGAACAAGATACC 25897 Query 177807 GGAGCAGGCATACATACCATAGGATTCTCGGTAATTTTTGACGAGCCAGTGAGCGGCCAA 177866 | ||| || ||||| || || | || ||||| || ||||||| ||||| ||| ||| Sbjct 25898 GTTGCACGCGTACATGCCGTACGCCTCGCGGTAGTTCTTGACGATCCAGTAGGCGTACAA 25957 Query 177867 TTTGGAGACGCCATAGACGGATCGTGGGTAGAAGGGTGTCTCCTCAGTTTGTGGAGTTTC 177926 |||| ||| || || || || ||||||||||| ||| ||||| ||| || || || Sbjct 25958 CTTGGCGACTCCGTAAGGCGAACGAGGGTAGAAGGGCGTCGTCTCAGATTGAGGGGTCTC 26017 Query 177927 TCGGACTTTACCAAACATCTCCGAAGTTGAGGCTTGGTA 177965 ||| || || ||| ||| ||||| ||||||||||| Sbjct 26018 GACGACCTTGCCGTACAACTCGGAAGTCGAGGCTTGGTA 26056 >seq178 Length=42423 Score = 105 bits (116), Expect = 8e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 177748 ATCTTCTTTGTGACAAAGTCGGCACCTCGTCTCGGTGATTCGTGGTTGAAGAGGATTCCG 177807 ||||| | ||||| ||| | || || | || || ||||||||||||||||| ||| Sbjct 36723 ATCTTTCTCGTGACGAAGGTGCGGCCACGGCGGGGGGACTCGTGGTTGAAGAGGATACCG 36782 Query 177808 GAGCAGGCATACATACCATAGGATTCTCGGTAATTTTTGACGAGCCAGTGAGCGGCCAAT 177867 ||| || ||||| | || || || ||||| || ||||||| |||| ||| ||| Sbjct 36783 TTGCACGCGTACATGTCGTACGACTCGCGGTAGTTCTTGACGATCCAGAAGGCGTACAAC 36842 Query 177868 TTGGAGACGCCATAGACGGATCGTGGGTAGAAGGGTGTCTCCTCAGTTTGTGGAGTTTCT 177927 |||| ||| || ||| || || ||||||||||| ||| ||| | || || || || Sbjct 36843 TTGGCGACTCCGTAGGGCGAACGAGGGTAGAAGGGGGTCGTCTCGGACTGAGGGGTCTCG 36902 Query 177928 CGGACTTTACCAAACATCTCCGAAGTTGAGGCTTGGTA 177965 || || || ||| |||||| || ||||| ||||| Sbjct 36903 ACAACCTTGCCGTACAACTCCGAGGTCGAGGCCTGGTA 36940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596532098143520