Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010705.1_202016-07-08] 5,029 sequences; 28,124,222 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1 206 4e-47 seq15 107 3e-17 seq314 93.3 6e-13 seq12 91.5 2e-12 >seq1 Length=262052 Score = 206 bits (228), Expect = 4e-47 Identities = 201/259 (78%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 259923 CGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGG 259982 |||| |||||||| || ||||| ||||| | ||||||| |||||| || || ||| | Sbjct 258582 CGCCGACGCTCTTCAACGCCGGAACGCCTCACCCGCAGCTTTCGTCCTGTTTCCTGGTCA 258523 Query 259983 ACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCT 260042 ||||||| |||||||| || ||||| || |||||||| ||| |||||||||||||| Sbjct 258522 CGATGAAGGATGATTCGATTGAAGGCATTTACGACACGCTTAAGACGTGCGCGCTCATCT 258463 Query 260043 CCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACG 260102 ||||| | ||||| || |||||||| | ||||| | ||||| | ||| ||||| Sbjct 258462 CCAAGACCGCCGGTGGTATCGGTTTGAGCATCCACAACATCCGCGCGACCGGCTCCTACA 258403 Query 260103 TGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACA 260162 | || ||||| |||||| | || |||||| |||| |||||||| || || | ||| ||| Sbjct 258402 TCGCCGGCACGAACGGCTACTCGAACGGCATTGTCCCCATGCTCCGTGTCTACAACAACA 258343 Query 260163 CGGCGCGCTACGTCGACCA 260181 | ||||||||||||||||| Sbjct 258342 CCGCGCGCTACGTCGACCA 258324 Score = 107 bits (118), Expect = 3e-17 Identities = 293/455 (64%), Gaps = 6/455 (1%) Strand=Plus/Minus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 || ||| |||||| || ||||| || |||||| || ||||||||||||||| || Sbjct 258322 GGTGGCAACAAGCGTCCCGGAGCCTTCGCGATCTACCTCGAGCCGTGGCACGCCGACGTC 258263 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 || | | |||||||| |||||||||||||| |||| ||| |||| || Sbjct 258262 TTCGAATTCCTGGACCTTCGCAAGAACCACGGCAA-GGAG-----GAAGTTCGCGCTCGT 258209 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCGC 261967 |||||||| | | || |||| ||| || || ||| || | | | ||| | || Sbjct 258208 GATCTCTTCTTTGCGCTCTGGATTCCCGATCTTTTCATGGAGCGTGTCGAGGCCGCCGGC 258149 Query 261968 GACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCGCGGCC 262027 || ||| | ||||| ||||| |||| || |||||||| |||||| |||||||| || Sbjct 258148 GATTGGCCTCTCTTCTGCCCCGCCGAAGCCCCCGGCCTACACGAAGTCTATGGCGAGGAG 258089 Query 262028 TTTGACGCCCTCTATGAGNNNNNNNNNNNNNNNNNNNNNNCGCGGACCGTCGTGCCCGCA 262087 || |||| | | ||| | || | ||||| Sbjct 258088 TTCCGCGCCTTGTTCGAGAAATACGAAAAGGAGGGCCGCGCCAAGAAAACGATCCCCGCG 258029 Query 262088 CGACAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTC 262147 | | || | |||| || ||| | | ||||| |||| || |||| || | ||| || Sbjct 258028 CAAAAGCTTTGGTACGCGATTCTTGAAGCCCAGGTCGAAACTGGCAACCCTTTTATGCTC 257969 Query 262148 TACAAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAGGCC 262207 ||||| ||||||| ||| || ||||| |||| || ||||| | | | | Sbjct 257968 TACAAAGACGCCGCGAACAAGAAATCGAACCAAAAGAATCTTGGCACGATCAAGTCGTCG 257909 Query 262208 AACCTGTGCACCGAGATCGTCCAGTTTTCGTCGCC 262242 |||||||||||||||||| || ||| ||| |||| Sbjct 257908 AACCTGTGCACCGAGATCATCGAGTACTCGGCGCC 257874 >seq15 Length=154199 Score = 107 bits (118), Expect = 3e-17 Identities = 170/238 (71%), Gaps = 7/238 (3%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| |||| | |||| || ||||| ||||| || |||||||||||||| ||| | |||| Sbjct 93231 GATCTGGGCACAGTAC-AAGAAGGCTGAGGCATCTTTTTGGACCGCCGAAGAGATGGACC 93173 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTCATCA 1455891 | | |||| | | |||||| ||| | |||||||||| | |||||| Sbjct 93172 TGTCCAAGGACATGCACGACTGGGACAACAAGCTCAAGCCCGACGAGCGCTACTTCATCT 93113 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 |||||||||||||| ||||||||||| ||| |||||||| ||||||| ||| || Sbjct 93112 CGCACGTCCTCGCCT-TTTTCGCCGCCTCCGACGGCATCGTCAACGAGAACTTGGTCGAG 93054 Query 1455952 CGCTT-TATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008 || || | || |||||||| | | ||||| || | || ||||| || || ||| Sbjct 93053 CGATTCTCTG-GTGAGGTCCAGTCAGCCGAGGCTCGATGCTTCTACGGTTTTCAAATC 92997 >seq314 Length=22980 Score = 93.3 bits (102), Expect = 6e-13 Identities = 159/228 (70%), Gaps = 12/228 (5%) Strand=Plus/Minus Query 724916 CAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTC 724975 ||||||| | ||||| || |||||| |||| | ||| || |||||| | ||| Sbjct 20828 CAAGGTGTTGAAGCAAGTCCACCCCGACACCGGT-----ATC-TCGAACAAGGCGATGCT 20775 Query 724976 GATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCT 725035 |||| | |||||||| |||||||| || | || |||||| || ||| || | || Sbjct 20774 GATCCTCAACTCGTTCGTCAACGATATCTTTGAGCGCATCACCATCGAAGCGTGCAAGCT 20715 Query 725036 GGCGCGCTCCAACAAGCGCAACACGA---TCGGCACGCGCGAGATCCAGACCGCCGTGCG 725092 ||| || |||| | ||| ||| || ||||||||||||||||| | || || Sbjct 20714 CGCGACCTACAACCA---CAAGGCGACTATCTCGTCGCGCGAGATCCAGACCTCGGTCCG 20658 Query 725093 CCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||||| | | ||| || ||| ||| ||||||| |||| || ||||| Sbjct 20657 ATTGATCCTCCCCGGAGAGCTGTCCAAGCACGCCATCTCGGAAGGCAC 20610 >seq12 Length=175502 Score = 91.5 bits (100), Expect = 2e-12 Identities = 136/189 (72%), Gaps = 8/189 (4%) Strand=Plus/Plus Query 724958 CTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGG 725017 ||| |||||| | ||| ||| | |||||||| ||||||||||| | || |||||| Sbjct 137927 CTCGAACAAGGCGATGCTAATCCTCAACTCGTTCGTCAACGACATCTTTGAGCGCATCAC 137986 Query 725018 CACCGAGGCCGGTCGCCTGGCGCGCTCCA-ACAAGCGCAAC---ACGATCGGCACGCGCG 725073 | |||||| ||| | || ||| | | |||| | ||| |||||| |||||| Sbjct 137987 CCTCGAGGC--GTC--CAAGCTCGCGCAATACAACCACAAGGCGACGATCACGTCGCGCG 138042 Query 725074 AGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCG 725133 |||||||||| | || ||| ||||| | | || ||| || ||| ||||||| |||| | Sbjct 138043 AGATCCAGACTTCGGTTCGCTTGATCCTCCCTGGAGAATTGTCCAAGCACGCCATCTCGG 138102 Query 725134 AGGGCACCA 725142 | ||||||| Sbjct 138103 AAGGCACCA 138111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177326143706698