Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010705.1_202016-07-08] 5,029 sequences; 28,124,222 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq10 113 1e-19 seq154 104 7e-17 seq3228 102 2e-16 seq68 98.7 3e-15 seq95 96.9 1e-14 >seq10 Length=176449 Score = 113 bits (124), Expect = 1e-19 Identities = 166/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||||||||| || | | ||||| | || || || ||||| || || ||||| | Sbjct 14223 TTTGCATACCACCTCGGAGACGGAGAACCAAGTGCAGCGTCGACTCCTTCTGGATATTGT 14282 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 |||| | | || || ||||| || || || || ||||||||||| | || ||||| | Sbjct 14283 AATCGGCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGT 14342 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | |||||||| || || || || || || || || || || || || |||| || || | Sbjct 14343 CTGGAGGAATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGG 14402 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || | ||||| ||||| || || || || || || ||||| Sbjct 14403 ACTCGACCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 14457 Score = 109 bits (120), Expect = 2e-18 Identities = 165/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||||||||| || | | || || | || || || ||||| || || ||||| | Sbjct 13995 TTTGCATACCACCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATATTGT 14054 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 |||| | | || || ||||| || || || || ||||||||||| | || ||||| | Sbjct 14055 AATCGGCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGT 14114 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | |||||||| || || || || || || || || || || || || |||| || || | Sbjct 14115 CTGGAGGAATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGG 14174 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || |||| ||||| || || || || || || || || ||||| Sbjct 14175 ACTCGACCTCGAGCGTAATCGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 14229 Score = 102 bits (112), Expect = 2e-16 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| || || || ||||| || || ||||| ||||| | | || || ||||| || | Sbjct 13567 CAAG-TGCAGCGTCGACTCCTTCTGGATATTGTAATCGGCGAGCGTGCGGCCATCCTCGA 13625 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 | || || ||||||||||| | || ||||| || |||||||| || || || || || | Sbjct 13626 GCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTGGA 13685 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || || || || || || |||| || || | || || || || || | ||||| | Sbjct 13686 TCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTTGC 13745 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||| || || || || || || ||||| Sbjct 13746 CGGTCAGGGTCTTGACGAAGATTTGCAT 13773 >seq154 Length=48613 Score = 104 bits (114), Expect = 7e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || | || || || ||||| ||||| || || || || | Sbjct 44772 ACCACCACGCAGGCGGAGGACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGC 44713 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 || || || ||||| || || || || || |||||||| ||||||||||| || || || Sbjct 44712 CAAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGG 44653 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 || ||||| || || || || || | || || || || |||| || || | || || Sbjct 44652 GATGCCTTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTCGAC 44593 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCA 140736 || || || | ||||| || || || || || ||||| || |||| Sbjct 44592 CTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATTTGCA 44546 >seq3228 Length=310 Score = 102 bits (112), Expect = 2e-16 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| || || || ||||| || || ||||| ||||| | | || || ||||| || | Sbjct 300 CAAG-TGCAGCGTCGACTCCTTCTGGATATTGTAATCGGCGAGCGTGCGGCCATCCTCGA 242 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 | || || ||||||||||| | || ||||| || |||||||| || || || || || | Sbjct 241 GCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTGGA 182 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || || || || || || |||| || || | || || || || || | ||||| | Sbjct 181 TCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTTGC 122 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||| || || || || || || ||||| Sbjct 121 CGGTCAGGGTCTTGACGAAGATTTGCAT 94 >seq68 Length=86121 Score = 98.7 bits (108), Expect = 3e-15 Identities = 148/209 (71%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 140527 GAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTT 140586 || |||| || || || ||||| ||||| || || || || | || || || ||||| | Sbjct 30812 GACCAAG-TGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCATCCT 30870 Query 140587 CAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCT 140646 | || || || || |||||||| ||||||||||| || || || || ||||| || || | Sbjct 30871 CGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTT 30930 Query 140647 GAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCT 140706 | || || | || || || || |||| || || | || || || || || | |||| Sbjct 30931 GGATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTCT 30990 Query 140707 TTCCGGTTAGTGTTTTTACAAAAATCTGC 140735 | || || || || || ||||| || ||| Sbjct 30991 TGCCCGTAAGAGTCTTGACAAAGATTTGC 31019 >seq95 Length=70211 Score = 96.9 bits (106), Expect = 1e-14 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | || || || ||||| || || || || ||||| Sbjct 218 CATACCACCACGGAGACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATC 159 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || ||||| || || || || ||||| ||||| |||||||| || || || Sbjct 158 GGCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGGTCTGG 99 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || || |||||||| || || | || || || || |||| || || | || Sbjct 98 GGGAATGCCCTCCTTATCCTGGATCTTGGTCTTGACGTTGTCGATCGTGTCCGAGGACTC 39 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTT 140722 || || || || | ||||| || || || || || Sbjct 38 GACCTCGAGCGTGATCGTCTTGCCCGTCAGCGTCTT 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515156766003287