Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010705.1_202016-07-08] 5,029 sequences; 28,124,222 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq10 185 1e-41 seq95 165 9e-36 seq3228 159 4e-34 seq68 154 2e-32 seq154 150 2e-31 seq195 114 1e-20 seq1 109 6e-19 seq178 89.7 6e-13 >seq10 Length=176449 Score = 185 bits (204), Expect = 1e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || ||||||||||| || || || ||||| ||||| Sbjct 14001 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCGTCG 13942 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| | |||||||| ||||||||||||||||| ||||||||||||||| Sbjct 13941 GATACGATCGACAATGTCAAGGCTAAGATTCAGGACAAGGAGGGCATTCCTCCAGACCAG 13882 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || ||||| ||||| |||||||||| || || || || || || ||| Sbjct 13881 CAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAAT 13822 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || | || | ||||| || ||||| Sbjct 13821 ATCCAGAAGGAGTCGACGCTGCACTTGGTGCTCCGTCTCCGAGGTGG 13775 Score = 167 bits (184), Expect = 3e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || ||||||||||| || || || ||||| ||||| Sbjct 13773 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 13714 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||||| || || || ||||||||||| ||||||||||||||| Sbjct 13713 GACACGATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAG 13654 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || |||||||| ||||| |||||||||| || || || || || || ||| Sbjct 13653 CAGCGATTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAAT 13594 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| || || || || | || | ||||| || || ||||| Sbjct 13593 ATCCAGAAGGAGTCGACGCTGCACTTGGTGCTCCGTCTCCGAGGCGGACA 13544 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || || |||||||| ||||| || ||||| ||||| Sbjct 14229 ATGCAAATCTTCGTCAAGACCCTGACTGGCAAGACGATTACGCTCGAGGTCGAGTCCTCG 14170 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||||| || || || ||||||||||| ||||||||||||||| Sbjct 14169 GACACGATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAG 14110 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || |||||||| ||||| |||||||||| || || || || || || ||| Sbjct 14109 CAGCGATTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAAT 14050 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || | || | ||||| || ||||| Sbjct 14049 ATCCAGAAGGAGTCGACGCTGCACTTGGTGCTCCGTCTCCGAGGTGG 14003 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || ||||||||||| || || || ||||| ||||| Sbjct 14457 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 14398 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||||| || || || ||||||||||| ||||||||||||||| Sbjct 14397 GACACGATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAG 14338 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || |||||||| ||||| |||||||||| || || || || || || ||| Sbjct 14337 CAGCGATTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAAT 14278 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || | || | ||||| || ||||| Sbjct 14277 ATCCAGAAGGAGTCGACGCTGCACTTGGTTCTCCGTCTCCGAGGTGG 14231 >seq95 Length=70211 Score = 165 bits (182), Expect = 9e-36 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||||||||| |||||||| || || || ||||| ||||| Sbjct 216 ATGCAGATCTTTGTCAAGACGCTTACGGGCAAGACGATCACGCTCGAGGTCGAGTCGTCG 275 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||| | || |||||||||||||| || ||||| ||||||||| Sbjct 276 GACACGATCGACAACGTCAAGACCAAGATTCAGGACAAGGAAGGCATTCCCCCAGACCAG 335 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || || || ||||| |||||||||| ||||| || || || || || Sbjct 336 CAGCGATTGATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGTACGCTCGCGGATTACAAC 395 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 |||| ||||| || || || || | || ||||||| || ||||| ||| Sbjct 396 ATCCAGAAGGAGTCGACGCTCCACTTGGTGCTGCGTCTCCGTGGTGGTCAA 446 >seq3228 Length=310 Score = 159 bits (176), Expect = 4e-34 Identities = 157/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || ||||||||||| || || || ||||| ||||| Sbjct 94 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 153 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||||| || || || ||||||||||| ||||||||||||||| Sbjct 154 GACACGATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAG 213 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || |||||||| ||||| |||||||||| || || || || || || ||| Sbjct 214 CAGCGATTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAAT 273 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 |||| ||||| || || || || Sbjct 274 ATCCAGAAGGAGTCGACGCTGCA 296 >seq68 Length=86121 Score = 154 bits (170), Expect = 2e-32 Identities = 169/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 27408 GCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGA 27467 |||||||||||||||||| ||||| |||||||| || || || ||||| ||||| || Sbjct 31019 GCAAATCTTTGTCAAGACTCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGA 30960 Query 27468 TAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCA 27527 | || | || | ||| | || || || |||||||| || || || ||||||||||| Sbjct 30959 CACGATCGACAACGTCAAGACCAAGATCCAAGACAAGGAAGGCATCCCGCCAGACCAGCA 30900 Query 27528 GCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGT 27587 ||||| || ||||| || ||||| |||||||||| || ||| | || ||||| || | Sbjct 30899 ACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTACAACAT 30840 Query 27588 CCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||||| || || || || | ||| | || || || ||||| Sbjct 30839 CCAAAAGGAGTCGACCCTCCACTTGGTCCTCCGCCTCCGAGGTGG 30795 >seq154 Length=48613 Score = 150 bits (166), Expect = 2e-31 Identities = 169/226 (75%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 27407 TGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTG 27466 ||||||||||||||||||| || || |||||||| || || || ||||| ||||| | Sbjct 44546 TGCAAATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCG 44605 Query 27467 ATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGC 27526 | | || | || | ||| | || || || |||||||| || || || |||||||||| Sbjct 44606 ACACGATCGACAACGTCAAGACCAAGATCCAAGACAAGGAAGGCATCCCGCCAGACCAGC 44665 Query 27527 AGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATG 27586 | ||||| || ||||| || ||||| |||||||||| || ||| | || ||||| || Sbjct 44666 AACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTACAACA 44725 Query 27587 TCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| || || || || | ||| | || || || ||||| Sbjct 44726 TCCAAAAGGAGTCGACCCTCCACTTGGTCCTCCGCCTGCGTGGTGG 44771 >seq195 Length=38400 Score = 114 bits (126), Expect = 1e-20 Identities = 221/321 (69%), Gaps = 9/321 (3%) Strand=Plus/Minus Query 24744 GAGATGTTTGGCAAGGTGCAGGAGACGCCACAGTCGGAGACCACTCCATTTTATCCGCGA 24803 ||| ||| |||||||| ||||| || || || ||||| || || || || || || Sbjct 26038 GAGTTGTACGGCAAGGTCGTCGAGACCCCTCAATCTGAGACGACGCCCTTCTACCCTCGT 25979 Query 24804 AGCCCGTATGGGGTCTCAAAGGTGTTCGCGTACTGGATAACCAAGAACTACCGTGAGGCC 24863 || || || ||| | ||| ||| ||| |||||||| |||||||||||| ||||| Sbjct 25978 TCGCCTTACGGAGTCGCCAAGTTGTACGCCTACTGGATCGTCAAGAACTACCGCGAGGCG 25919 Query 24864 CATGGGATATATGCATGCAACGGAATTCTGTTCAACCATGAGTCGGAGCGTCGGGGACCT 24923 | || || || || |||||||| || |||||||||| ||||| |||||| || | Sbjct 25918 TACGGCATGTACGCGTGCAACGGTATCTTGTTCAACCACGAGTCCCCGCGTCGTGGTCGC 25859 Query 24924 GAATTTGTTACACGAAAGATTACTCTTGGTATTGACCA---TTGGATCAAGACA--AGGG 24978 ||||| || | |||||| | | | | | | | | | | || | || ||| Sbjct 25858 ACCTTTGTCACGAGGAAGATTTCCCGAGCTGTCGCCGAGATCTCGCTC-GGTCAACAGGA 25800 Query 24979 C-ACCTATTGAGCTGGGAAACCTAGATGCCAAACGTGATTGGGGGCATGCAGCCGACTAC 25037 | ||| | | || || || | || ||||| ||||||||||| || || ||||||||| Sbjct 25799 CTGCCTCT--ACCTCGGCAATATGGAGGCCAAGCGTGATTGGGGACACGCCGCCGACTAC 25742 Query 25038 GTCGACGCCATGTGGCGCATG 25058 ||||| | |||||| | ||| Sbjct 25741 GTCGAGGGTATGTGGAGGATG 25721 >seq1 Length=262052 Score = 109 bits (120), Expect = 6e-19 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 |||||||| |||| ||||||||||||||||| || || ||||||||||||| | |||| Sbjct 256757 GCCCGCGTGCGCAAGTAGTACATGCCCGTCTTCAGTCCTCTCTTCCAGCCGTAGAAGTGC 256816 Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151 || || |||||| ||| | || ||| || || | |||||| || || || ||||| Sbjct 256817 ATCGACGTGAGCTGCGCCATCGTTGGGCTCGACAAGTGGATGTTAAGCGATTGCGACTGG 256876 Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCAT 80211 ||||| || || || || || | || || ||||| | |||||| | | ||||| Sbjct 256877 TCAATGAAGGCACCTCGGTCGGCGGACAAGTCGATAATAGTCTTTTGCGAGAGCTCCCAG 256936 Query 80212 ACTGT 80216 || || Sbjct 256937 ACGGT 256941 >seq178 Length=42423 Score = 89.7 bits (98), Expect = 6e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 24744 GAGATGTTTGGCAAGGTGCAGGAGACGCCACAGTCGGAGACCACTCCATTTTATCCGCGA 24803 ||| ||| |||||||| ||||| || ||||| ||||| || || || || || || Sbjct 36922 GAGTTGTACGGCAAGGTTGTCGAGACCCCTCAGTCCGAGACGACCCCCTTCTACCCTCGT 36863 Query 24804 AGCCCGTATGGGGTCTCAAAGGTGTTCGCGTACTGGATAACCAAGAACTACCGTGAGGCC 24863 || || || ||| | ||| ||| ||| | |||||| |||||||||||| ||| | Sbjct 36862 TCGCCCTACGGAGTCGCCAAGTTGTACGCCTTCTGGATCGTCAAGAACTACCGCGAGTCG 36803 Query 24864 CATGGGATATATGCATGCAACGGAATTCTGTTCAACCATGAGTC 24907 | | || || || |||||||| || || |||||||| ||||| Sbjct 36802 TACGACATGTACGCGTGCAACGGTATCCTCTTCAACCACGAGTC 36759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570274548862480