Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010715.1_202016-07-08] 5,717 sequences; 25,920,840 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq99 111 1e-19 seq32 104 2e-17 seq84 95.1 1e-14 seq63 95.1 1e-14 seq508 91.5 1e-13 >seq99 Length=61224 Score = 111 bits (122), Expect = 1e-19 Identities = 160/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||| |||| || | || ||||||||||| ||||| ||||| ||| Sbjct 57374 CCACCACGCAGGCGGAGGACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCC 57315 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| || | ||||| ||||| ||||| ||| | || || | |||||||| || Sbjct 57314 AAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGGG 57255 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| || || | | ||| || || | ||| Sbjct 57254 ATGCCTTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTCGACC 57195 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCA 21174 || | ||| ||||||||||| || | || |||||||| ||||||| Sbjct 57194 TCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATTTGCA 57149 >seq32 Length=102239 Score = 104 bits (114), Expect = 2e-17 Identities = 158/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||||| || | ||| |||| || | || ||||||||||| ||||| ||||| ||| Sbjct 55470 CCACCTCGGAGGCGGAGGACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCC 55411 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| || | ||||| ||||| ||||| ||| | || || | |||||||| || Sbjct 55410 AAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGGG 55351 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| || || | | ||| || || | ||| Sbjct 55350 ATGCCTTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTCGACC 55291 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGC 21173 || | ||| || |||||||| || | || |||||||| |||||| Sbjct 55290 TCGAGGGTGATCGTCTTGCCCGTAAGAGTCTTGACAAAGATTTGC 55246 >seq84 Length=66372 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||||| || | ||| |||| |||| || |||||||| || || || || || || Sbjct 131 CCACCTCGGAGACGGAGAACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAATCGGCG 190 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | ||||| ||||| ||||| ||| | || | || ||||||||| || Sbjct 191 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGAGGA 250 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| || || | | ||| || || || ||| Sbjct 251 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACC 310 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || || ||||||||||| | || ||||| || |||||||| Sbjct 311 TCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 357 >seq63 Length=77442 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| || | || |||||||| || ||||| || ||||| || || || | ||| Sbjct 7722 AGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCCGCGAGCGTACGGCCATCC 7663 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||| |||||||| | || | || ||||||||| ||| | |||||||||||| Sbjct 7662 TCGAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC 7603 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||| || || | | ||| || || | ||| || | || || ||| Sbjct 7602 TGAATCTTGGTCTTGACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGCGTGATCGTC 7543 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | ||| |||||||| || ||||| Sbjct 7542 TTGCCCGTAAGCGTCTTGACAAAGATCTGCAT 7511 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| || | || |||||||| || || || || || || || || || | ||| Sbjct 7266 AGCACCAAGTGGAGCGTCGACTCCTTCTGGATATTGTAATCGGCGAGCGTGCGGCCATCC 7207 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||| ||||| || | || | || ||||||||| ||| | |||||||||||| Sbjct 7206 TCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC 7147 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | | ||| || || || ||| || | || || ||| Sbjct 7146 TGGATCTTGGTCTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTC 7087 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | ||| |||||||| || ||||| Sbjct 7086 TTGCCCGTAAGCGTCTTGACAAAGATCTGCAT 7055 >seq508 Length=10342 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007 ||| ||||| || | |||||||| |||| || |||||||| || || || || || || Sbjct 262 TCCGCCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAATCGGC 203 Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067 || || || | ||||| ||||| ||||| || | || | || ||||||||| || Sbjct 202 GAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGAGG 143 Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127 | ||| |||||||| ||||| || || | | ||| ||||| | ||| Sbjct 142 AATGCCCTCCTTGTCCTGAATCTTAGCCTTGACATTGTCGATCGTATCCGACGACTCGAC 83 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || || ||||||||||| | || ||||| || |||||||| Sbjct 82 CTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 35 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422229778694372