Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010715.1_202016-07-08] 5,717 sequences; 25,920,840 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq429 275 6e-69 seq32 114 1e-20 seq99 107 2e-18 seq508 95.1 1e-14 seq63 91.5 1e-13 seq84 86.0 6e-12 >seq429 Length=14113 Score = 275 bits (304), Expect = 6e-69 Identities = 963/1493 (65%), Gaps = 50/1493 (3%) Strand=Plus/Plus Query 22502 GATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGC 22561 || ||| | || ||||| | || ||| || || |||||| ||||| ||||||||| Sbjct 9736 GAAGTGTATGGCTCGAAGCACTCGTTGAAGCCGAGGATCTGACTCGTCGACGCGGTCGGC 9795 Query 22562 ATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATC 22621 || ||||| ||| |||||||| | || |||||||||| ||| || ||||||| Sbjct 9796 ATTGGCGCGCACACGAGCGAGTTACGCAGACCGTGCTTTGCAATCTTCTCCTTGAGCTCG 9855 Query 22622 GACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCG 22681 |||||||||||||||| | ||| |||||| |||||| ||||| |||| | |||| Sbjct 9856 GACCAGTCCCACAGATTGCTCGGGGTCACAC---CCCACAAGTCGTACTGCAGCTCGCCC 9912 Query 22682 CGACTCGCCGGGCTGCCTTCGTACGTTTCGTA---------------CGGA----CCAT- 22721 || ||||| || ||| || ||| ||| | || Sbjct 9913 TGAGAAGCCGGAGATCCAGGGTAAGTCGAGTAGTAGCCTGGGTCGCCCGGGTTAGCGATG 9972 Query 22722 ---ATATCGCG-GCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAG 22777 | ||||| || | ||||| || ||| | |||| ||| || || ||||||||| Sbjct 9973 GCAAAGTCGCGCGCCATGTCGCACGACGACTCGATCGCGGCGTGGTAGATGGTCTCGAAG 10032 Query 22778 ATTTTCTTGTTCAA-TTCGGCGGC---GGCGACGCTTTCGTACGGCATACGCATCATCAC 22833 |||| |||||| | || ||| | ||||| ||| ||||||| || || Sbjct 10033 ATTTGCTTGTTGAGCTTACGCGCCTCGGGCGAA----TCGAACGGCATCGCCAAGGCCAT 10088 Query 22834 GAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACAC 22893 ||||||||| || | ||| || || || || ||||| || |||| | || || Sbjct 10089 GAACGCGTCGGCGAGACCTTGCACTCCGATGCCGATGGGGCGGTGGCGGAAGTTGGAGTT 10148 Query 22894 TTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCAC 22953 || |||||| | ||||| | || ||||| | | ||||||||| | || Sbjct 10149 TTGCGCCTCGATGACGGGATAGTAGTTGACGTCGATGATGCGGTTCAAGTTGAAAGCGAC 10208 Query 22954 AATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATTGTACAACAAACTT 23013 | || | | ||||||||| ||||| | | | || || Sbjct 10209 GACCTTGACGACCTCGTGCAACTTCTTAAAGTCGTACACGCCG--TCCTTGATGAAGCTC 10266 Query 23014 GTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTAC 23073 | ||| |||||||||| | ||||| ||||| |||||| | || |||||| | Sbjct 10267 GGCAACG-CGATCGAGGCCAAGTTGCAGACGGCGCACTCGTCCGGCGCCGAGTACTCGAT 10325 Query 23074 AATTTCGGTACATAGATTGCTAC-ACTTTATCGTGCCCAAATTGCTCTGGTT-GCTTTTT 23131 || ||||| || || || | || |||| |||||||| | ||| | ||||| | ||| | Sbjct 10326 GATCTCGGTGCACAGGTT-CGACGACTTGATCGTGCCAAGATTCTTTTGGTTCGATTTCT 10384 Query 23132 CGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATG 23191 | | || | || ||||||||||| | || |||| || |||||||| | || | Sbjct 10385 TGTTCGCG-GCGTCTTTGTAGAGCATAAAAGGGTTGCCAGTTTCGACCTGGGCTTCAAGA 10443 Query 23192 ATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCCTCGTAC 23251 ||||| ||| | | || ||| | | | | | | ||| || | ||||| Sbjct 10444 ATCGCGTACCAAAGCTTTTGCGCGGGGATCGTTTTCTTGGCGCGGCCCTCCTTTTCGTAT 10503 Query 23252 TTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATC 23311 || | | |||| ||| || || | || || ||| |||||||| | || Sbjct 10504 TTCTCGAACAAGGCGCGGAACTCCTCGCCATAGACTTCGTGGAGGCCGGGGGCTTCGGCG 10563 Query 23312 GGACACATGAGACTCCACATTGA-GTCATTTTCAACGCGTCTCATAAAAAGATCCGGTAT 23370 || || | |||| ||| || | | | || || || ||| |||||||| || || Sbjct 10564 GGGCAGAAGAGAGGCCA-ATCGCCGGCGGCCTCGACACGCTCCATGAAAAGATCGGGAAT 10622 Query 23371 CCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAA 23430 ||| || || |||| || || || ||||| || ||||| |||||| |||||| | Sbjct 10623 CCAGAGCGCAAAGAAGAGATCACGAGCGCGAACTTCCTCCTTGCCGTGGTTCTTGCGAAG 10682 Query 23431 ATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGG 23490 |||| || || || ||||| || ||||||||||||||||| | || || || || || Sbjct 10683 GTCCAGGAATTCGAAGACGTCGGCGTGCCACGGCTCGAGGTAGATCGCGAAGGCTCCGGG 10742 Query 23491 TCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGG 23550 | ||| ||||| || || |||||||| || || ||||||||||| || | ||||| || Sbjct 10743 ACGCTTGTTGCCACCTTGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGG 10802 Query 23551 CACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTT 23610 || | ||||| || |||| | ||| || | || || | || || | ||| Sbjct 10803 GACAATGCCGTTCGAGTAGCCGTTTGTGCCGGCGATGTAGGAGCCGGTCGCGCGGATGTT 10862 Query 23611 GTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGT 23670 ||| | | ||||| || || ||| | | || || || | |||||| || || || Sbjct 10863 GTGGATGCTCAAACCGATACCGCCGGCGGTCTTGGAGATGAGCGCGCACGTCTTAAGCGT 10922 Query 23671 GTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTG 23730 |||||| ||||| || || || || || ||| ||||| |||||| || || | || Sbjct 10923 GTCGTAAATGCCTTCAATCGAATCATCCTTCATCGTGACCAGGAAACAGGACGAAAGCTG 10982 Query 23731 CGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGA 23790 || | ||||| |||| ||| || ||||| |||||| |||||||| | | || Sbjct 10983 CGGGTGAGGCGTTCCGGCGTTGAAGAGCGTCGGCGAGGCGTGGGTAAAGTAGCGCTCGGA 11042 Query 23791 CATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGAC 23850 ||| || ||||||| | | | || |||||||| | ||||| || |||| |||||| Sbjct 11043 CATAAGGTTGTACGACTGCAAGACGCGCTCAATGTCGTGACCGTGGATGCCGACGGCGAC 11102 Query 23851 GCGCATCATCATGTATTGAGGTC--TC-TCGACCGTGACGCCGTTAATTTTGAACAGATA 23907 ||||| | ||||| ||| || | || ||||| | ||||| || | || || Sbjct 11103 ACGCATGAGCATGTGTTGCGGGCGTTCGGCGACCTT---GCCGTCGATGCGAAGCAAGTA 11159 Query 23908 TGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGT 23960 || |||| | |||||| || ||||| |||| ||| || || || |||| Sbjct 11160 GGAGCGTTCGAGCGTTTTGAAGCCAAAGTAGTTGTAGCCGAAATCGCGGTCGT 11212 >seq32 Length=102239 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || || |||||| || || |||||||| || ||||| ||||||||| |||| || || | Sbjct 55240 AATCAGGCAAATCTTTGTCAAGACTCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTC 55299 Query 31249 GTCCGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 |||||||| |||| | ||||| || ||| | |||||||||||| | ||||| | Sbjct 55300 GTCCGACACGATCGACAACGTCAAGACCAAGA-TCCAAGACAAGGAAGGCATCCCGCCAG 55358 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 ||||||| ||||| || || || ||||| ||| | || || || || ||| | Sbjct 55359 ACCAGCAACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACT 55418 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 | ||||| ||||| || ||||| || || |||| || Sbjct 55419 ACAACATCCAAAAGGAGTCGACCCTCCACTTGGTCCT 55455 >seq99 Length=61224 Score = 107 bits (118), Expect = 2e-18 Identities = 169/239 (71%), Gaps = 6/239 (3%) Strand=Plus/Plus Query 31194 TGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCG 31253 ||||||| || || ||||| || || ||||| || |||||| |||| || || |||||| Sbjct 57149 TGCAAATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCG 57208 Query 31254 ACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| |||| | ||||| || ||| | |||||||||||| | ||||| |||||| Sbjct 57209 ACACGATCGACAACGTCAAGACCAAGA-TCCAAGACAAGGAAGGCATCCCGCCAGACCAG 57267 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || || || ||||| ||| | || || || || ||| || ||| Sbjct 57268 CAACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTACAAC 57327 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT----AGAAGCG 31427 || ||||| || ||||| || || |||| || | ||| | || ||| ||||||| Sbjct 57328 ATCCAAAAGGAGTCGACCCTCCACTTGGTCCTCCGCCTGCGTGGTGGTGCCAAGAAGCG 57386 >seq508 Length=10342 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| ||||| ||||| |||||||| |||| || || |||| Sbjct 35 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCGTCG 94 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | ||||| | || ||||||||| ||| | || || |||||| Sbjct 95 GATACGATCGACAATGTCAAGGCTAAGATTCAGGACAAGGAGGGCATTCCTCCAGACCAG 154 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||| | || ||||||||||| ||| | || || Sbjct 155 CAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGA 189 >seq63 Length=77442 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || || ||||| |||||||| |||| || || |||| Sbjct 7511 ATGCAGATCTTTGTCAAGACGCTTACGGGCAAGACGATCACGCTCGAGGTCGAGTCGTCG 7570 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || ||| | ||||||||||||| | || || ||||| Sbjct 7571 GACACGATCGACAACGTCAAGACCAAGATTCA-GGACAAGGAAGGCATTCCCCCAGACCA 7629 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTT---GGAAGACTCTATGACTATGAGCGATTA 31368 |||||| | || ||||| ||||| ||| | ||| | | || | || | | ||||| Sbjct 7630 GCAGCGATTGATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGTACG-CT-CGCG-GATTA 7686 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || ||||| || || |||| || Sbjct 7687 CAACATCCAGAAGGAGTCGACGCTCCACTTGGTGCT 7722 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || || ||||| |||||||| |||| || || | || Sbjct 7055 ATGCAGATCTTTGTCAAGACGCTTACGGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 7114 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || ||| | ||||||||||||| | || || ||||| Sbjct 7115 GACACGATCGACAACGTCAAGACCAAGA-TCCAGGACAAGGAAGGCATTCCCCCAGACCA 7173 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||| | || ||||||||||| ||| | || || Sbjct 7174 GCAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGA 7209 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| ||||| ||||| |||||||| |||| || || | || Sbjct 7283 ATGCAGATCTTTGTCAAGACGCTGACGGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 7342 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || ||| | ||| ||||| ||| | || || ||||| Sbjct 7343 GACACGATCGACAACGTCAAGACCAAGA-TCCAGGATAAGGAGGGCATTCCCCCAGACCA 7401 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 || ||||| || ||||||||||| ||| | || || || | |||||| || Sbjct 7402 ACAACGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAA 7461 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || ||||| || || |||| || Sbjct 7462 CATCCAGAAGGAGTCGACGCTCCACTTGGTGCT 7494 >seq84 Length=66372 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| ||||| ||||| |||||||| |||| || || | || Sbjct 357 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 298 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || |||||||| ||| | || || |||||| Sbjct 297 GACACGATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAG 238 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||| | || || |||||||| ||| | || || Sbjct 237 CAGCGATTGATCTTTGCTGGCAAGCAGCTCGAGGA 203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445734544418640