Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010715.1_202016-07-08] 5,717 sequences; 25,920,840 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq508 116 3e-21 seq99 113 4e-20 seq84 113 4e-20 seq32 109 5e-19 seq63 107 2e-18 seq4372 89.7 4e-13 >seq508 Length=10342 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| ||||||| || | ||||| |||| || |||||||| Sbjct 35 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCGTCG 94 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || ||||| || || | || || | ||| ||||| || || ||||| || ||| Sbjct 95 GATACGATCGA--CAATGTCAAGGCTAAGATTCAG-GACAAGGAGGGCATTCCTCCAGAC 151 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | || || || ||||| || | || |||| ||||| | | ||||||| Sbjct 152 CAGCAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTAC 211 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 ||||| || || || || ||||| || || ||||| | || |||| ||| Sbjct 212 AATATCCAGAAGGAGTCGACGCTGCACTTGGTGCTCCGTCTCCGAGGCGGA 262 >seq99 Length=61224 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 ||| ||||||| ||||| ||||| | || || || ||||||| |||| || |||||| Sbjct 57145 ACAGTGCAAATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCG 57204 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||||| ||||| | ||| || ||| ||||| ||||| || || || ||| Sbjct 57205 TCCGACACGATCGACAACGTCAAGACCAAGATCCAAGACAAGGAAGGCATCCCGCCAGAC 57264 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || || | || ||||||||||| || | || |||| ||||| ||| ||| ||| Sbjct 57265 CAGCAACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTAC 57324 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||| || || || || || || || || Sbjct 57325 AACATCCAAAAGGAGTCGACCCTCCACTTGGTCCT 57359 >seq84 Length=66372 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| ||||||| || | ||||| |||| || ||||| || Sbjct 357 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 298 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| || || ||||| || ||||| Sbjct 297 GACACGATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAG 238 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| ||||| || | || |||| ||||| | | |||||||||| Sbjct 237 CAGCGATTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAAT 178 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || ||||| || || || || Sbjct 177 ATCCAGAAGGAGTCGACGCTGCACTTGGTTCT 146 >seq32 Length=102239 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 25001 GCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGA 25060 |||||| ||||| |||||| | || || || | ||||| |||| || |||||||| || Sbjct 55246 GCAAATCTTTGTCAAGACTCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGA 55305 Query 25061 CACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACA 25120 ||| ||||| | ||| || ||| ||||| ||||| || || || ||||| || Sbjct 55306 CACGATCGACAACGTCAAGACCAAGATCCAAGACAAGGAAGGCATCCCGCCAGACCAGCA 55365 Query 25121 GCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATAT 25180 || | || ||||||||||| || | || |||| ||||| ||| ||| ||||| || Sbjct 55366 ACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTACAACAT 55425 Query 25181 TCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || || || || || || || Sbjct 55426 CCAAAAGGAGTCGACCCTCCACTTGGTCCT 55455 >seq63 Length=77442 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || | ||||| |||| || ||||| || Sbjct 7055 ATGCAGATCTTTGTCAAGACGCTTACGGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 7114 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| ||||| ||||| || ||||| Sbjct 7115 GACACGATCGACAACGTCAAGACCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 7174 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || ||||| || | || |||| ||||| | | |||||||||| Sbjct 7175 CAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAAT 7234 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || ||||| || || ||||| Sbjct 7235 ATCCAGAAGGAGTCGACGCTCCACTTGGTGCT 7266 >seq4372 Length=245 Score = 89.7 bits (98), Expect = 4e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 25042 TCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAG 25101 |||| || ||||| || ||||| ||||| | ||| || ||| ||||| || | Sbjct 241 TCGAGGTCGAGTCCTCGGACACGATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGG 182 Query 25102 GGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCA 25161 | ||||| || ||||| ||||| | || ||||| ||||| || | || |||| |||| Sbjct 181 GCATTCCTCCAGACCAGCAGCGATTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCA 122 Query 25162 CTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | | | |||||||||||| || || || || ||||| || || ||||| Sbjct 121 CGCTCGCCGATTACAATATCCAGAAGGAGTCGACGCTGCACTTGGTGCT 73 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433297807465355