Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010715.1_202016-07-08] 5,717 sequences; 25,920,840 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq429 217 2e-50 seq19 100 3e-15 seq29 87.8 2e-11 >seq429 Length=14113 Score = 217 bits (240), Expect = 2e-50 Identities = 345/491 (70%), Gaps = 19/491 (4%) Strand=Plus/Plus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 ||||||||||||||||| |||| ||| |||| ||||||||||| || | |||||| || Sbjct 10759 TGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGGACAATGCCGTTCGAG 10818 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 | |||||| ||||| || | ||||| ||||| ||||| | ||||| | || ||| Sbjct 10819 TAGCCGTTTGTGCCGGCGATGTAGGAGCCGGTCGCGCGGATGTTGTGGATGCTCAAACCG 10878 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || |||||||| | ||||||||||||||||||| || ||||||||||| ||||| || Sbjct 10879 ATACCGCCGGCGGTCTTGGAGATGAGCGCGCACGTCTTAAGCGTGTCGTAAATGCCTTCA 10938 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 ||||| || ||||||| || || || || ||||| |||||||| | ||| ||| Sbjct 10939 ATCGAATCATCCTTCATCGTGACCAGGAAACAGGACGAAAGCTGCGGGTGAGGCGTTCCG 10998 Query 1630306 GCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTA-GGT 1630364 |||||||||||||| |||| || ||| || | || ||||| || ||| | Sbjct 10999 GCGTTGAAGAGCGTCGGCGAGGCGTGGGTAAAGTAGCGCTCGGACATAAGGTTGTACGAC 11058 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 || || |||||| || | |||| | || | | ||||| |||||| Sbjct 11059 TGCAAG-ACGCGC------------TCAATGTCGTGA---CCGTGGATGCCGACGGCGAC 11102 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCG-CGCACCTTGGTCAGGTAGG 1630483 ||||||||||||| || || || ||| |||| |||| || | | || ||||| Sbjct 11103 ACGCATGAGCATGTGTTGCGGGCGTTCGGCGACCTTGCCGTCGATGCGAAG-CAAGTAGG 11161 Query 1630484 ACCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGGATGG 1630543 | || | || ||| |||||||||| || | ||||||||||||| | || || Sbjct 11162 AGCGTTCGAGCGTTTTGAAGCCAAAGTAGTTGTAGCCGAAATCGCGGTCGTAGATGACGG 11221 Query 1630544 CGGCGTCGAGG 1630554 || || |||| Sbjct 11222 CGCTGTTGAGG 11232 Score = 116 bits (128), Expect = 5e-20 Identities = 290/449 (65%), Gaps = 0/449 (0%) Strand=Plus/Plus Query 1628152 GGCGACGAAAACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTC 1628211 |||| ||| ||| || |||||||||||||||||| | |||| | |||| || || ||| Sbjct 10309 GGCGCCGAGTACTCGATGATCTCGGTGCACAGGTTCGACGACTTGATCGTGCCAAGATTC 10368 Query 1628212 TGCTGGTTGGTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCG 1628271 | ||||| | || ||| ||||||| |||| |||||| | || ||| || ||| Sbjct 10369 TTTTGGTTCGATTTCTTGTTCGCGGCGTCTTTGTAGAGCATAAAAGGGTTGCCAGTTTCG 10428 Query 1628272 ATCTGCGCCGCGACGATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGG 1628331 | ||| || | | || || |||| | || ||||||| | || |||||| Sbjct 10429 ACCTGGGCTTCAAGAATCGCGTACCAAAGCTTTTGCGCGGGGATCGTTTTCTTGGCGCGG 10488 Query 1628332 CCCTNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGG 1628391 |||| || || |||| ||| ||||| ||| Sbjct 10489 CCCTCCTTTTCGTATTTCTCGAACAAGGCGCGGAACTCCTCGCCATAGACTTCGTGGAGG 10548 Query 1628392 CCGGGCGCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATA 1628451 ||||| || |||| || || ||||| | ||| ||||| ||| | | | || ||| Sbjct 10549 CCGGGGGCTTCGGCGGGGCAGAAGAGAGGCCAATCGCCGGCGGCCTCGACACGCTCCATG 10608 Query 1628452 AAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCG 1628511 || || || |||| || || | ||||| || || || || |||||||||||| Sbjct 10609 AAAAGATCGGGAATCCAGAGCGCAAAGAAGAGATCACGAGCGCGAACTTCCTCCTTGCCG 10668 Query 1628512 TGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAG 1628571 |||||||| ||||| || | |||| | |||||||||||||||||| |||||| Sbjct 10669 TGGTTCTTGCGAAGGTCCAGGAATTCGAAGACGTCGGCGTGCCACGGCTCGAGGTAGATC 10728 Query 1628572 GCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 || ||||| || |||||| ||| || Sbjct 10729 GCGAAGGCTCCGGGACGCTTGTTGCCACC 10757 Score = 102 bits (112), Expect = 1e-15 Identities = 171/242 (71%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 1626982 TGGTCGACGGTAAACTGGATGGCGTCGGCGGCGGGCCTGGTGCGCAGATAGTACATGCCG 1627041 ||||||||||| |||| ||| || | |||||| || ||||||| ||||||||||| Sbjct 9159 TGGTCGACGGTGAACTTGATCGCACCAACGGCGGCCCGCGTGCGCAAGTAGTACATGCCC 9218 Query 1627042 GTCTTGAGGCCGCGGCGCCACGCGTAGGCGTGCATCGACGTGATGCGCTCGGGCGTCGCG 1627101 ||||| || || | ||| ||||| |||||||||||||| || | ||| | | Sbjct 9219 GTCTTCAGTCCTCTCTTCCAGCCGTAGAAGTGCATCGACGTGAGCTGCGCCATCGTTGGG 9278 Query 1627102 -TCGGCGCAGTACAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGATCGGCCGC 1627160 ||| | ||| | ||| ||||| || |||||| | ||| | || ||||| | Sbjct 9279 CTCGAC-AAGTGGATGTTAAGCGATTGCGACTGGTCAATGAAGGCACCTCGGTCGGCGGA 9337 Query 1627161 CATGTCGATGGTGACCCGGTTG-GGCACCTCCCACACGGTCTTGAAGATGGCCTTGAGGT 1627219 || |||||| | | | ||| | | |||||| ||||||||| ||||||||||||| | Sbjct 9338 CAAGTCGATAAT-AGTCTTTTGCGAGAGCTCCCAGACGGTCTTGTAGATGGCCTTGAGAT 9396 Query 1627220 CG 1627221 || Sbjct 9397 CG 9398 >seq19 Length=127323 Score = 100 bits (110), Expect = 3e-15 Identities = 103/132 (78%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 19053 ATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCC-GTG 19111 ||||| || ||||| |||||||| ||||||| ||| || ||||| ||||| ||| Sbjct 20637 ATCGGTGGTACGGTCACGTGCGTCATCCGCAACGCTCCGTTCGGTCTCGGAGAGCCCGTG 20696 Query 19112 CTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGG 19171 || |||||| | || ||| | ||||||||||||||||||||||| || |||||||| Sbjct 20697 -TTCGACAAGCTGGAAGCCCTCTTGGCCCACGCCATGCTGTCGATCCCCGCAACCAAGGG 20755 Query 19172 ATTCGAGATTGG 19183 || |||||||| Sbjct 20756 CTTTGAGATTGG 20767 >seq29 Length=105995 Score = 87.8 bits (96), Expect = 2e-11 Identities = 142/203 (70%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||| || ||| || | | ||||| ||| || | |||||||||||||||| || Sbjct 33068 GCTTGGACAATTCTCCAGGGAGGATCAAGCGAACCGAAGTCTGGATCTCGCGCGACGTGA 33127 Query 1254403 TCGTG---TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 |||| ||| | |||| | ||||| || | |||||| | |||||| || | Sbjct 33128 TCGTCGCCTTGTGGTTGT---ATTGCGCGAGCTTGGACGCCTCGAGGGTGATGCGCTCAA 33184 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519 ||||||||||| |||||||| | || ||||| |||||| ||||| ||| ||||| Sbjct 33185 AGATGTCGTTGACGAACGAGTTGAGGATTAGCATCGCCTTGTTCGAGATACCCGTGTCGG 33244 Query 1254520 GGTGCACCTGCTTGAGCACCTTG 1254542 |||| || || | | ||| ||| Sbjct 33245 GGTGAACTTGTCTCAACACTTTG 33267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106670036207289