Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010715.1_202016-07-08] 5,717 sequences; 25,920,840 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq429 210 3e-48 seq4 107 3e-17 seq29 91.5 2e-12 >seq429 Length=14113 Score = 210 bits (232), Expect = 3e-48 Identities = 202/259 (78%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 259923 CGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGG 259982 |||| |||||||| || ||||| ||||| | ||||||| |||||| || || ||| | Sbjct 11017 CGCCGACGCTCTTCAACGCCGGAACGCCTCACCCGCAGCTTTCGTCCTGTTTCCTGGTCA 10958 Query 259983 ACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCT 260042 ||||||| |||||||| || ||||| || |||||||| ||| |||||||||||||| Sbjct 10957 CGATGAAGGATGATTCGATTGAAGGCATTTACGACACGCTTAAGACGTGCGCGCTCATCT 10898 Query 260043 CCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACG 260102 ||||| | |||||||| |||||||| | ||||| | ||||| | ||| ||||| Sbjct 10897 CCAAGACCGCCGGCGGTATCGGTTTGAGCATCCACAACATCCGCGCGACCGGCTCCTACA 10838 Query 260103 TGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACA 260162 | || ||||| |||||| | || |||||| |||| |||||||| || || | ||| ||| Sbjct 10837 TCGCCGGCACAAACGGCTACTCGAACGGCATTGTCCCCATGCTCCGTGTCTACAACAACA 10778 Query 260163 CGGCGCGCTACGTCGACCA 260181 | ||||||||||||||||| Sbjct 10777 CCGCGCGCTACGTCGACCA 10759 Score = 107 bits (118), Expect = 3e-17 Identities = 293/455 (64%), Gaps = 6/455 (1%) Strand=Plus/Minus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 || ||| |||||| || ||||| || |||||| || ||||||||||||||| || Sbjct 10757 GGTGGCAACAAGCGTCCCGGAGCCTTCGCGATCTACCTCGAGCCGTGGCACGCCGACGTC 10698 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 || | | |||||||| |||||||||||||| |||| ||| |||| || Sbjct 10697 TTCGAATTCCTGGACCTTCGCAAGAACCACGGCAA-GGAG-----GAAGTTCGCGCTCGT 10644 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCGC 261967 |||||||| | | || |||| ||| || || ||| || | | | ||| | || Sbjct 10643 GATCTCTTCTTTGCGCTCTGGATTCCCGATCTTTTCATGGAGCGTGTCGAGGCCGCCGGC 10584 Query 261968 GACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCGCGGCC 262027 || ||| | ||||| ||||| |||| || |||||||| |||||| |||||||| || Sbjct 10583 GATTGGCCTCTCTTCTGCCCCGCCGAAGCCCCCGGCCTCCACGAAGTCTATGGCGAGGAG 10524 Query 262028 TTTGACGCCCTCTATGAGNNNNNNNNNNNNNNNNNNNNNNCGCGGACCGTCGTGCCCGCA 262087 || |||| | | ||| | || | ||||| Sbjct 10523 TTCCGCGCCTTGTTCGAGAAATACGAAAAGGAGGGCCGCGCCAAGAAAACGATCCCCGCG 10464 Query 262088 CGACAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTC 262147 | | || | |||| || ||| | | ||||| |||| || |||| || | ||| || Sbjct 10463 CAAAAGCTTTGGTACGCGATTCTTGAAGCCCAGGTCGAAACTGGCAACCCTTTTATGCTC 10404 Query 262148 TACAAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAGGCC 262207 ||||| ||||||| ||| || ||||| |||| || ||||| | | | | Sbjct 10403 TACAAAGACGCCGCGAACAAGAAATCGAACCAAAAGAATCTTGGCACGATCAAGTCGTCG 10344 Query 262208 AACCTGTGCACCGAGATCGTCCAGTTTTCGTCGCC 262242 |||||||||||||||||| || ||| ||| |||| Sbjct 10343 AACCTGTGCACCGAGATCATCGAGTACTCGGCGCC 10309 >seq4 Length=201922 Score = 107 bits (118), Expect = 3e-17 Identities = 170/238 (71%), Gaps = 7/238 (3%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| |||| | |||| || ||||| ||||| || |||||||||||||| ||| | |||| Sbjct 141019 GATCTGGGCACAGTAC-AAGAAGGCTGAGGCATCTTTTTGGACCGCCGAAGAGATGGACC 140961 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTCATCA 1455891 | | |||| | | |||||| ||| | |||||||||| | |||||| Sbjct 140960 TGTCCAAGGACATGCACGACTGGGACAACAAGCTCAAGCCCGACGAGCGCTACTTCATCT 140901 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 |||||||||||||| ||||||||||| ||| |||||||| ||||||| ||| || Sbjct 140900 CGCACGTCCTCGCCT-TTTTCGCCGCCTCCGACGGCATCGTCAACGAGAACTTGGTCGAG 140842 Query 1455952 CGCTT-TATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008 || || | || |||||||| | | ||||| || | || ||||| || || ||| Sbjct 140841 CGATTCTCTG-GTGAGGTCCAGTCAGCCGAGGCTCGATGCTTCTACGGTTTTCAAATC 140785 >seq29 Length=105995 Score = 91.5 bits (100), Expect = 2e-12 Identities = 136/189 (72%), Gaps = 8/189 (4%) Strand=Plus/Minus Query 724958 CTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGG 725017 ||| |||||| | ||| ||| | |||||||| ||||||||||| | || |||||| Sbjct 33231 CTCGAACAAGGCGATGCTAATCCTCAACTCGTTCGTCAACGACATCTTTGAGCGCATCAC 33172 Query 725018 CACCGAGGCCGGTCGCCTGGCGCGCTCCA-ACAAGCGCAAC---ACGATCGGCACGCGCG 725073 | |||||| ||| | || ||| | | |||| | ||| |||||| |||||| Sbjct 33171 CCTCGAGGC--GTC--CAAGCTCGCGCAATACAACCACAAGGCGACGATCACGTCGCGCG 33116 Query 725074 AGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCG 725133 |||||||||| | || ||| ||||| | | || ||| || ||| ||||||| |||| | Sbjct 33115 AGATCCAGACTTCGGTTCGCTTGATCCTCCCTGGAGAATTGTCCAAGCACGCCATCTCGG 33056 Query 725134 AGGGCACCA 725142 | ||||||| Sbjct 33055 AAGGCACCA 33047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177259784842154